Browse Element(s) Details


OsAffx.24030.1.S1_x_at

Description tigr:9629.m07273
TID=OsAffx.24030.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7344011/11hypothetical protein
LOC_Os06g133204/11Protein kinase domain containing protein, expressed
LOC_Os07g048203/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73400OsAffx.24028.1.S1_at11/111+42864536..42864797hypothetical protein
LOC_Os01g73410Os.31375.1.S2_at11/111+42868178..42873927Chromosome condensation factor, putative, expressed
LOC_Os01g73410Os.31375.1.S1_at11/111+42868178..42873927Chromosome condensation factor, putative, expressed
LOC_Os01g73420Os.6110.1.S1_at11/111+42874549..42875838Mitochondrial carrier protein, expressed
LOC_Os01g73430OsAffx.24029.2.S1_x_at11/111+42876691..42883710RNA polymerase Rpb1, domain 2 family protein
LOC_Os01g73440OsAffx.24030.1.S1_at11/111+42885896..42886801hypothetical protein
LOC_Os01g73440OsAffx.24030.1.S1_x_at11/111+42885896..42886801hypothetical protein
LOC_Os01g73450Os.11630.1.S1_at11/111+42889671..42893841Uridylate kinase, putative, expressed
LOC_Os01g73460Os.26985.1.S1_at9/111+42894691..42899924PHD finger family protein, putative, expressed
LOC_Os01g73470Os.5947.1.S1_at11/111+42901703..42904665Growth inhibition and differentiation-related protein 88 homolog, putative, expressed
LOC_Os01g73480OsAffx.11840.1.S1_x_at11/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73480OsAffx.11840.2.S1_at10/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73480OsAffx.26722.2.S1_s_at1/111+42906190..42910493acetyltransferase, GNAT family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24030.1.S1_x_at--443--1411Chr01:42886103..42886127 (25 bp)
AGCACTTTCAACTCCTTCTGGCCAT
LOC_Os01g73440
OsAffx.24030.1.S1_x_at--403--7453Chr01:42886309..42886333 (25 bp)
GTGTCAAGAAGAATGGCCTCCCGGC
LOC_Os01g73440
OsAffx.24030.1.S1_x_at--60--251Chr01:42886339..42886363 (25 bp)
ATATCAACACCAACACGAGCTTCGC
LOC_Os01g73440
OsAffx.24030.1.S1_x_at--872--6271Chr01:42886384..42886408 (25 bp)
GATGTACACGGTGGTGCCGGACTCC
LOC_Os01g73440
OsAffx.24030.1.S1_x_at--797--5151Chr01:42886416..42886440 (25 bp)
GCAACGCCACCATCGAGAGGTTTCT
LOC_Os01g73440
OsAffx.24030.1.S1_x_at--304--6833Chr01:42886435..42886459 (25 bp)
GTTTCTTAAAGAGATCGCCGGCGAG
LOC_Os01g73440
OsAffx.24030.1.S1_x_at--397--1513Chr01:42886482..42886506 (25 bp)
AGCAGTTGGCCGGATTCACGAACAA
LOC_Os01g73440
OsAffx.24030.1.S1_x_at--1162--9671Chr01:42886497..42886521 (25 bp)
TCACGAACAACTACTTGGCTCGGCT
LOC_Os01g73440
OsAffx.24030.1.S1_x_at--215--7013Chr01:42886546..42886570 (25 bp)
GTACAAGGGCATGCTCCCGAACGGT
LOC_Os01g73440
OsAffx.24030.1.S1_x_at--12--5451Chr01:42886564..42886588 (25 bp)
GAACGGTCACATGGTCGGCCGCTGC
LOC_Os01g73440
OsAffx.24030.1.S1_x_at--446--9971Chr01:42886719..42886743 (25 bp)
TACCTGTCGGTTGGCCTGCGATAGA
LOC_Os01g73440
Target Sequence 
AGCACTTTCAACTCCTTCTGGCCATCGTCGTCGATGTGTCAAGAAGAATGGCCTCCCGGCCGTCAATATCAACACCAACA
CGAGCTTCGCGCCGGGGACGGCCCGGCGGCGATGTACACGGTGGTGCCGGACTCCCAGATACGCAACGCCACCATCGAGA
GGTTTCTTAAAGAGATCGCCGGCGAGAAGCCCATCCGGTTCACGGCGCAGCAGTTGGCCGGATTCACGAACAACTACTTG
GCTCGGCTCGGCGCCGGCGGTTTCGGCACCGTGTACAAGGGCATGCTCCCGAACGGTCACATGGTCGGCCGCTGCGCGCT
CGGCCGCCTGCCGCCACCGCCGCTCCGCGCCTCCGCTCCATTCCGCTTCACCGGCCGCCGCGCGCTCGCACGCCGCCTCC
GCCGGCCGCCGCTCAGCCCCGCTCGTCGCCCGGCCGTCTGCTCCCTACCTGTCGGTTGGCCTGCGATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24030.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis