Browse Element(s) Details


OsAffx.24033.1.S1_x_at

Description gb:NM_189438.1
DB_XREF= gi:34905959
GEN=OJ1656_A11.21
TID=OsAffx.24033.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1656_A11.21 (OJ1656_A11.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7382011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73780Os.8226.1.S1_at10/111+43062842..43064765expressed protein
LOC_Os01g73790Os.4743.1.S1_at11/111+43065613..43069022NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g73800Os.48590.1.A1_at8/111+43079854..43083967expressed protein
LOC_Os01g73810NANA1+43084679..43085455cation/hydrogen exchanger, putative
LOC_Os01g73820OsAffx.24033.1.S1_x_at11/111+43087187..43090370hypothetical protein
LOC_Os01g73820OsAffx.24033.2.S1_at8/111+43087187..43090370hypothetical protein
LOC_Os01g73830OsAffx.24034.1.S1_x_at10/111+43098075..43099890expressed protein
LOC_Os01g73840Os.7677.1.S1_x_at11/111+43101682..43105473expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24033.1.S1_x_at--538--10192Chr01:43088448..43088472 (25 bp)
TATTCTGGTGGAACCGTTAGTGCAA
LOC_Os01g73820
OsAffx.24033.1.S1_x_at--572--7431Chr01:43088500..43088524 (25 bp)
GTGTTTTAGTGTTTGCGAGCAGTCC
LOC_Os01g73820
OsAffx.24033.1.S1_x_at--1015--5931Chr01:43088516..43088540 (25 bp)
GAGCAGTCCTACGTGGGCACAATTA
LOC_Os01g73820
OsAffx.24033.1.S1_x_at--681--3291Chr01:43088533..43088557 (25 bp)
CACAATTATGTGATCGGGTTCGTTC
LOC_Os01g73820
OsAffx.24033.1.S1_x_at--513--7171Chr01:43088542..43088566 (25 bp)
GTGATCGGGTTCGTTCTAAAATGGA
LOC_Os01g73820
OsAffx.24033.1.S1_x_at--98--2431Chr01:43088559..43088583 (25 bp)
AAAATGGAACATGTCGTACCTACGA
LOC_Os01g73820
OsAffx.24033.1.S1_x_at--181--7171Chr01:43088571..43088595 (25 bp)
GTCGTACCTACGAACGTGATGAGAA
LOC_Os01g73820
OsAffx.24033.1.S1_x_at--226--5031Chr01:43088603..43088627 (25 bp)
GCAGTATGTTGCAAGGTTTGGATCA
LOC_Os01g73820
OsAffx.24033.1.S1_x_at--1091--7611Chr01:43088629..43088653 (25 bp)
GGGAACATTTTGTGATGATGCCAAT
LOC_Os01g73820
OsAffx.24033.1.S1_x_at--261--8871Chr01:43088641..43088663 (23 bp)
TGATGATGCCAATGTCATGTGAGAC
LOC_Os01g73820
OsAffx.24033.1.S1_x_at--250--4091Chr01:43090291..43090315 (25 bp)
CGAAGTTTGGCATGAACCGGAGGAT
LOC_Os01g73820
Target Sequence 
TATTCTGGTGGAACCGTTAGTGCAAATGGAAAATTTGATGAGATGAAAGTAGGTGTTTTAGTGTTTGCGAGCAGTCCTAC
GTGGGCACAATTATGTGATCGGGTTCGTTCTAAAATGGAACATGTCGTACCTACGAACGTGATGAGAATGGAAGGGCAGT
ATGTTGCAAGGTTTGGATCAGGGGAACATTTTGTGATGATGCCAATGTCATGTGAGACAACGAAGTTTGGCATGAACCGG
AGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24033.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis