Browse Element(s) Details


OsAffx.24046.2.S1_x_at

Description tigr:9640.m02691
TID=OsAffx.24046.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4009011/11hAT family dimerisation domain containing protein
LOC_Os12g2798011/11hAT family dimerisation domain containing protein
LOC_Os07g1785011/11hAT family dimerisation domain containing protein
LOC_Os06g0737011/11hAT family dimerisation domain containing protein
LOC_Os01g568304/11hAT family dimerisation domain containing protein
LOC_Os01g538704/11hAT family dimerisation domain containing protein
LOC_Os07g177803/11hAT family dimerisation domain containing protein
LOC_Os01g153803/11hAT family dimerisation domain containing protein
LOC_Os06g074403/11hAT family dimerisation domain containing protein
LOC_Os04g487803/11Transposase, putative
LOC_Os06g124803/11hAT family dimerisation domain containing protein, expressed
LOC_Os01g109103/11hAT family dimerisation domain containing protein
LOC_Os01g050303/11hAT family dimerisation domain containing protein
LOC_Os01g280402/11hAT family dimerisation domain containing protein
LOC_Os02g010402/11hypothetical protein
LOC_Os07g393402/11hAT family dimerisation domain containing protein
LOC_Os01g384401/11hAT family dimerisation domain containing protein
LOC_Os08g189601/11Transposase, putative
LOC_Os05g262001/11hypothetical protein
LOC_Os06g147301/11Transposase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40060OsAffx.4567.2.S1_at11/115+23446217..23447293WRKY DNA binding domain containing protein, expressed
LOC_Os05g40070OsAffx.15035.1.S1_at11/115+23453168..23455737WRKY DNA binding domain containing protein
LOC_Os05g40080OsAffx.4567.1.S1_at11/115+23467405..23468510WRKY DNA binding domain containing protein
LOC_Os05g40090OsAffx.24046.2.S1_x_at11/115+23469748..23472108hAT family dimerisation domain containing protein
LOC_Os05g40090OsAffx.24046.7.S1_x_at4/115+23469748..23472108hAT family dimerisation domain containing protein
LOC_Os05g40090OsAffx.24046.3.S1_x_at1/115+23469748..23472108hAT family dimerisation domain containing protein
LOC_Os05g40090OsAffx.24046.5.S1_x_at1/115+23469748..23472108hAT family dimerisation domain containing protein
LOC_Os05g40100OsAffx.10222.1.S1_x_at2/115+23473740..23475130hypothetical protein
LOC_Os05g40100OsAffx.727.1.S1_x_at1/115+23473740..23475130hypothetical protein
LOC_Os05g40100Os.10263.1.S1_at1/115+23473740..23475130hypothetical protein
LOC_Os05g40100Os.51841.1.S1_x_at1/115+23473740..23475130hypothetical protein
LOC_Os05g40110OsAffx.23890.2.S1_at5/115+23481901..23487452retrotransposon protein, putative, unclassified
LOC_Os05g40110OsAffx.23890.2.S1_x_at5/115+23481901..23487452retrotransposon protein, putative, unclassified
LOC_Os05g40110OsAffx.23890.4.S1_x_at1/115+23481901..23487452retrotransposon protein, putative, unclassified
LOC_Os05g40120NANA5+23487966..23488975hypothetical protein
LOC_Os05g40130OsAffx.4570.1.S1_at11/115+23489476..23490046hypothetical protein
LOC_Os05g40140OsAffx.4571.1.S1_at11/115+23491852..23493428retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24046.2.S1_x_at--495--3455Chr06:3544178..3544202 (25 bp)
CAGTCTTGGTGCTGGACTTGGTGCT
LOC_Os06g07370
OsAffx.24046.2.S1_x_at--512--20712Chr07:23566424..23566445 (22 bp)
ACTTGGTGCTGGTAATGCTGGTGCT
LOC_Os07g39340
OsAffx.24046.2.S1_x_at--775--3017Chr06:3544206..3544230 (25 bp)
AATGCTGGTGCTAGTGCCAGTCCAG
LOC_Os06g07370
OsAffx.24046.2.S1_x_at--554--10614Chr06:3544232..3544256 (25 bp)
TTCTGGACTTGGTGATGCTGGTGCC
LOC_Os06g07370
OsAffx.24046.2.S1_x_at--882--974Chr06:3544293..3544317 (25 bp)
AGGAGAACTTCTGCTACCGCTTTGA
LOC_Os06g07370
OsAffx.24046.2.S1_x_at--867--3515Chr06:3544343..3544367 (25 bp)
CATGAATGCATCTGAGTTGTTTGCC
LOC_Os06g07370
OsAffx.24046.2.S1_x_at--1027--256Chr06:3544411..3544435 (25 bp)
ATATCCTTAACTGGTGGCATGAGCA
LOC_Os06g07370
OsAffx.24046.2.S1_x_at--743--9555Chr06:3544454..3544478 (25 bp)
TCTTTCCATATTAGCTAGGGATGTT
LOC_Os06g07370
OsAffx.24046.2.S1_x_at--338--89515Chr06:3544480..3544504 (25 bp)
TGACTGTTCCTGTTTCTACTATATC
LOC_Os06g07370
OsAffx.24046.2.S1_x_at--493--48921Chr07:23566707..23566730 (24 bp)
GCTTTTAGCTTAACTGGCAGGATCA
LOC_Os07g39340
OsAffx.24046.2.S1_x_at--598--7775Chr06:3544574..3544598 (25 bp)
GGTGCAAGCTTTGGCACTAATCAAA
LOC_Os06g07370
Target Sequence 
CAGTCTTGGTGCTGGACTTGGTGCTGGTAATGCTGGTGCTAGTGCCAGTCCAGGTTCTGGATTTGGTGCTGGTGCCAGTC
CAGGTTCTGGATTTGGTGCTAGTGCCAGTCCAGGTTCTGGACTTGGTGATGCTGGTGCCAGTGCAGGATCTGGACTTGGT
GCTGGTGCATTTTCTAGGAGAACTTCTGCTACCGCTTTGATTCAGGCTGTTTCTTCTACTGCTAACATGAATGCATCTGA
GTTGTTTGCCTATCTTGACAGTGACACTGTCAACCAATACGATGATGACTTCAATATCCTTAACTGGTGGCATGAGCACA
ACCACACCTATCCTATTCTTTCCATATTAGCTAGGGATGTTTTGACTGTTCCTGTTTCTACTATATCATCGGAATCTGCT
TTTAGCTTAACTGGCAGGATCATCGAGGAGCGACGACGGCGTCTAGCTCCTGACATGGTGCAAGCTTTGGCACTAATCAA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24046.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis