Browse Element(s) Details


OsAffx.24063.1.S1_at

Description tigr:9630.m00124
TID=OsAffx.24063.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0223011/11Cytochrome P450 51, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02210Os.2821.1.A1_s_at11/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210Os.2821.1.A1_at11/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210OsAffx.21870.2.S1_x_at8/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210OsAffx.21870.3.S1_x_at7/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210Os.38172.1.S1_x_at2/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210OsAffx.29532.2.S1_x_at1/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210OsAffx.29532.2.S1_at1/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02219NANA2+698138..698327NA
LOC_Os02g02230OsAffx.24063.1.S1_at11/112+708712..715746Cytochrome P450 51, putative, expressed
LOC_Os02g02240Os.4816.1.S1_at6/112+717857..719511expressed protein
LOC_Os02g02250Os.6160.1.S1_at11/112+726578..734044expressed protein
LOC_Os02g02260OsAffx.11864.1.S1_at11/112+738922..739370hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009813biological_processflavonoid biosynthesis
GO:0016126biological_processsterol biosynthesis
GO:0008398molecular_functionsterol 14-demethylase activity
GO:0016711molecular_functionflavonoid 3'-monooxygenase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24063.1.S1_at--686--5711Chr02:714674..714698 (25 bp)
GACTCACTGCATCAAAGAGGCCCTA
LOC_Os02g02230
OsAffx.24063.1.S1_at--970--8831Chr02:714724..714748 (25 bp)
TGATACGCCACGCAAGCAAGAGCTT
LOC_Os02g02230
OsAffx.24063.1.S1_at--870--1071Chr02:714790..714814 (25 bp)
AGGGACATACATTGGCCACCTGTAC
LOC_Os02g02230
OsAffx.24063.1.S1_at--44--1391Chr02:714828..714852 (25 bp)
AGACTGCCCTACATCTATAAGGACC
LOC_Os02g02230
OsAffx.24063.1.S1_at--1069--951Chr02:714847..714871 (25 bp)
AGGACCCTAATGTATATGACCCAAG
LOC_Os02g02230
OsAffx.24063.1.S1_at--219--2331Chr02:714900..714924 (25 bp)
AAAGTTGGTGGCAAGTTCTCCTACA
LOC_Os02g02230
OsAffx.24063.1.S1_at--180--2191Chr02:714922..714946 (25 bp)
ACACACCGTTTAGTGCCGGGAGGCA
LOC_Os02g02230
OsAffx.24063.1.S1_at--1134--6011Chr02:714958..714982 (25 bp)
GAGAGGATTTCGCTTACATGCAAAT
LOC_Os02g02230
OsAffx.24063.1.S1_at--119--2531Chr02:715011..715035 (25 bp)
AACTTTGACCTCGAATTGATCTCCC
LOC_Os02g02230
OsAffx.24063.1.S1_at--864--8831Chr02:715027..715051 (25 bp)
TGATCTCCCCTTTCCCAGAGGAAGA
LOC_Os02g02230
OsAffx.24063.1.S1_at--877--5971Chr02:715056..715080 (25 bp)
GAGAAATTCATTCCAGGTCCTAAAG
LOC_Os02g02230
Target Sequence 
GACTCACTGCATCAAAGAGGCCCTACGGTTGCACCCTCCAGCAAACCTGCTGATACGCCACGCAAGCAAGAGCTTCAGCG
TACAAACAAGACAAGGCCACAGGTATCAAATCCCCAAGGGACATACATTGGCCACCTGTACGACTGTCGGCAACAGACTG
CCCTACATCTATAAGGACCCTAATGTATATGACCCAAGTAGATTTGGTCCTGGTAGAGAGGAGGACAAAGTTGGTGGCAA
GTTCTCCTACACACCGTTTAGTGCCGGGAGGCACGTTTGTTTGGGAGAGGATTTCGCTTACATGCAAATTAAGGTGATAT
GGAGCCATTTGCTCAGGAACTTTGACCTCGAATTGATCTCCCCTTTCCCAGAGGAAGAATGGGAGAAATTCATTCCAGGT
CCTAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24063.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis