Browse Element(s) Details


OsAffx.24067.1.S1_at

Description tigr:9630.m00146
TID=OsAffx.24067.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=selenium-binding protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0242411/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02410Os.1311.1.S1_at11/112+838738..842672Luminal binding protein 3 precursor, putative, expressed
LOC_Os02g02424OsAffx.24067.1.S1_at11/112+853767..859877Zinc finger, C2H2 type family protein, expressed
LOC_Os02g02424Os.18086.1.A1_at11/112+853767..859877Zinc finger, C2H2 type family protein, expressed
LOC_Os02g02440OsAffx.24068.1.S1_at11/112+861602..862157hypothetical protein
LOC_Os02g02450Os.7996.1.S1_at11/112+862273..864882transposon protein, putative, unclassified, expressed
LOC_Os02g02460Os.53376.1.S1_at11/112+866007..869292transposon protein, putative, unclassified, expressed
LOC_Os02g02470Os.2246.1.S1_at11/112+870724..875779oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g02470OsAffx.1157.1.S1_at2/112+870724..875779oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g02480Os.17893.1.S1_at11/112+875904..878615Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g02490Os.56364.1.S1_x_at11/112+884324..887679Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24067.1.S1_at--1070--7651Chr02:858410..858434 (25 bp)
GGGATACTTCCAAACAGTGTGACAT
LOC_Os02g02424
OsAffx.24067.1.S1_at--701--5671Chr02:858390..858414 (25 bp)
GACATTCGTCTCAGTTTTGTCAGCA
LOC_Os02g02424
OsAffx.24067.1.S1_at--651--3371Chr02:858363..858387 (25 bp)
CAGCCATGCTGGGTTAATACAAGAA
LOC_Os02g02424
OsAffx.24067.1.S1_at--764--8851Chr02:858297..858321 (25 bp)
TGATCCCCGGCTTGAGCACTATGGA
LOC_Os02g02424
OsAffx.24067.1.S1_at--167--7991Chr02:858207..858231 (25 bp)
GGATGTCGAGCCTGATATTGTTATT
LOC_Os02g02424
OsAffx.24067.1.S1_at--1105--10851Chr02:858183..858207 (25 bp)
TTGGAGGTCACTTCTTAGTGCATGC
LOC_Os02g02424
OsAffx.24067.1.S1_at--231--10071Chr02:858168..858192 (25 bp)
TAGTGCATGCCTAGCTCATGGCAAT
LOC_Os02g02424
OsAffx.24067.1.S1_at--718--7311Chr02:858077..858101 (25 bp)
GTGCTTCTTTGGAACATGTATGCCT
LOC_Os02g02424
OsAffx.24067.1.S1_at--36--10111Chr02:857900..857924 (25 bp)
TATGTCACCTTGGAAATCATGGCTA
LOC_Os02g02424
OsAffx.24067.1.S1_at--10--411Chr02:857885..857909 (25 bp)
ATCATGGCTAGGCATCTCAAGATGG
LOC_Os02g02424
OsAffx.24067.1.S1_at--311--6251Chr02:857865..857889 (25 bp)
GATGGATCCCATACCATCTCCATTA
LOC_Os02g02424
Target Sequence 
GGGATACTTCCAAACAGTGTGACATTCGTCTCAGTTTTGTCAGCATGCAGCCATGCTGGGTTAATACAAGAAGGCAGAGA
GTTATTTGATAAAATGCGTGAAGTCTACCATATTGATCCCCGGCTTGAGCACTATGGATGCATGGTTGATCTGTTAGGAC
GGGGTGGACTTCTAGAAGAAGCAGAAGCTCTGATAGATCATATGGATGTCGAGCCTGATATTGTTATTTGGAGGTCACTT
CTTAGTGCATGCCTAGCTCATGGCAATGATAGATTAGCTGAGATTGCTGGAATGGAAATTATAAAGAGAGAACCTGGGGA
TGATGGGGTTTATGTGCTTCTTTGGAACATGTATGCCTTATCAAACAGATGGAAAGAAGCTTTGGATATGAGGAAGCAGA
TGTTGAGTAGGAAAATATACAAAAAACCGGGTTGCAGTTGGATTGAAGTTGATGGTGTCGTCCATGAATTTTTGGTAGAG
GACAAGACACATGATGCTAGAAGGGAAATTTATGTCACCTTGGAAATCATGGCTAGGCATCTCAAGATGGATCCCATACC
ATCTCCATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24067.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis