Browse Element(s) Details


OsAffx.24068.1.S1_at

Description tigr:9630.m00147
TID=OsAffx.24068.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0244011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02410Os.1311.1.S1_at11/112+838738..842672Luminal binding protein 3 precursor, putative, expressed
LOC_Os02g02424OsAffx.24067.1.S1_at11/112+853767..859877Zinc finger, C2H2 type family protein, expressed
LOC_Os02g02424Os.18086.1.A1_at11/112+853767..859877Zinc finger, C2H2 type family protein, expressed
LOC_Os02g02440OsAffx.24068.1.S1_at11/112+861602..862157hypothetical protein
LOC_Os02g02450Os.7996.1.S1_at11/112+862273..864882transposon protein, putative, unclassified, expressed
LOC_Os02g02460Os.53376.1.S1_at11/112+866007..869292transposon protein, putative, unclassified, expressed
LOC_Os02g02470Os.2246.1.S1_at11/112+870724..875779oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g02470OsAffx.1157.1.S1_at2/112+870724..875779oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g02480Os.17893.1.S1_at11/112+875904..878615Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g02490Os.56364.1.S1_x_at11/112+884324..887679Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24068.1.S1_at--1043--3531Chr02:861632..861656 (25 bp)
CATCTCAGACATGAATACGGGATTC
LOC_Os02g02440
OsAffx.24068.1.S1_at--858--9931Chr02:861647..861671 (25 bp)
TACGGGATTCATATTAATGATGACT
LOC_Os02g02440
OsAffx.24068.1.S1_at--430--131Chr02:861659..861818 (25 bp)
ATTAATGATGACTGTTGTGCCCTTA
LOC_Os02g02440
OsAffx.24068.1.S1_at--666--711Chr02:861663..861822 (25 bp)
ATGATGACTGTTGTGCCCTTATCAT
LOC_Os02g02440
OsAffx.24068.1.S1_at--1109--8691Chr02:861809..861833 (25 bp)
TGTGCCCTTATCATCTCTCTTGTAG
LOC_Os02g02440
OsAffx.24068.1.S1_at--791--451Chr02:861821..861845 (25 bp)
ATCTCTCTTGTAGATCACCCTGGTA
LOC_Os02g02440
OsAffx.24068.1.S1_at--62--9531Chr02:861824..861848 (25 bp)
TCTCTTGTAGATCACCCTGGTAACG
LOC_Os02g02440
OsAffx.24068.1.S1_at--934--6911Chr02:861830..861854 (25 bp)
GTAGATCACCCTGGTAACGTGTTCA
LOC_Os02g02440
OsAffx.24068.1.S1_at--53--6451Chr02:861833..861857 (25 bp)
GATCACCCTGGTAACGTGTTCAAGA
LOC_Os02g02440
OsAffx.24068.1.S1_at--722--3351Chr02:861836..861860 (25 bp)
CACCCTGGTAACGTGTTCAAGAAAT
LOC_Os02g02440
OsAffx.24068.1.S1_at--667--2571Chr02:861845..861869 (25 bp)
AACGTGTTCAAGAAATTGATCTTTA
LOC_Os02g02440
Target Sequence 
CATCTCAGACATGAATACGGGATTCATATTAATGATGACTGTTGTGCCCTTATCATCTCTCTTGTAGATCACCCTGGTAA
CGTGTTCAAGAAATTGATCTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24068.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis