Browse Element(s) Details


OsAffx.24082.1.S1_s_at

Description tigr:9630.m00250
TID=OsAffx.24082.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0348011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03410Os.2355.1.S1_at11/112+1387873..1394276Protein kinase domain containing protein, expressed
LOC_Os02g03420Os.54336.1.S1_at11/112+1394865..1397141PPR868-14, putative, expressed
LOC_Os02g03430Os.51630.1.A1_at11/112+1397698..1398983expressed protein
LOC_Os02g03440OsAffx.11876.1.S1_at10/112+1399613..1401222Sm protein, expressed
LOC_Os02g03450Os.5994.1.A1_at10/112+1402582..1404558Golgi SNARE 12 protein, putative, expressed
LOC_Os02g03460OsAffx.11877.1.S1_at11/112+1406098..1409346phosphatidate cytidylyltransferase family protein, expressed
LOC_Os02g03470Os.54187.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.27739.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.54187.1.A1_x_at11/112+1412107..1416005expressed protein
LOC_Os02g03480OsAffx.24082.1.S1_s_at11/112+1416610..1417705expressed protein
LOC_Os02g03490OsAffx.24083.1.S1_x_at11/112+1420014..1420997expressed protein
LOC_Os02g03490Os.10395.1.S1_s_at9/112+1420014..1420997expressed protein
LOC_Os02g03500Os.10395.1.S1_s_at9/112+1423747..1424390expressed protein
LOC_Os02g03510Os.11067.1.S1_at11/112+1427398..1428118expressed protein
LOC_Os02g03510Os.10395.1.S1_s_at9/112+1427398..1428118expressed protein
LOC_Os02g03520Os.12307.1.S1_at10/112+1430330..1430872expressed protein
LOC_Os02g03530OsAffx.11878.1.S1_at11/112+1433310..1436848expressed protein
LOC_Os02g03530OsAffx.11878.1.S1_s_at11/112+1433310..1436848expressed protein
LOC_Os02g03540Os.27658.1.S1_a_at11/112+1437433..1441125Ribose-phosphate pyrophosphokinase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24082.1.S1_s_at--815--7571Chr02:1417103..1417127 (25 bp)
GGGCTGGCGCTAAGGCCGCCATCGG
LOC_Os02g03480
OsAffx.24082.1.S1_s_at--113--8231Chr02:1417419..1417443 (25 bp)
GGCACCCAAGGTGTACGCGTGAGAT
LOC_Os02g03480
OsAffx.24082.1.S1_s_at--221--1051Chr02:1417427..1417451 (25 bp)
AGGTGTACGCGTGAGATCGATCGAT
LOC_Os02g03480
OsAffx.24082.1.S1_s_at--762--9231Chr02:1417479..1417503 (25 bp)
TCCATATATAAACTCGCTGTCGATT
LOC_Os02g03480
OsAffx.24082.1.S1_s_at--917--231Chr02:1417484..1417508 (25 bp)
ATATAAACTCGCTGTCGATTGTTTG
LOC_Os02g03480
OsAffx.24082.1.S1_s_at--286--6831Chr02:1417553..1417577 (25 bp)
GTTTAATTTACATGCAAATCTCGCG
LOC_Os02g03480
OsAffx.24082.1.S1_s_at--445--3133Chr02:1417557..1417581 (25 bp)
AATTTACATGCAAATCTCGCGATTT
LOC_Os02g03480
OsAffx.24082.1.S1_s_at--345--9751Chr02:1417618..1417642 (25 bp)
TAATTCATCCTTCTCGCTCCATATT
LOC_Os02g03480
OsAffx.24082.1.S1_s_at--688--571Chr02:1417624..1417648 (25 bp)
ATCCTTCTCGCTCCATATTAATTTG
LOC_Os02g03480
OsAffx.24082.1.S1_s_at--436--3651Chr02:1417627..1417651 (25 bp)
CTTCTCGCTCCATATTAATTTGTCC
LOC_Os02g03480
OsAffx.24082.1.S1_s_at--575--4331Chr02:1417650..1417674 (25 bp)
CCATGTTACATGTGTGTAAATGTTA
LOC_Os02g03480
Target Sequence 
GGGCTGGCGCTAAGGCCGCCATCGGGGTTGGCGCTGGCGTTGGTGCTGGCGCCGCCGTCGGGGCTGGCGTTGGAGCCGCC
GCCAAAGTCGCCGGCGCCGCCGAGGGCGCCGCCGGCGCGGCACCCAAGGTGTACGCGTGAGATCGATCGATCGAGCGGCG
TCCATCTCCACTACTCCATCCATATATAAACTCGCTGTCGATTGTTTGTTGTTAATAAAAGTTTGGTTAATTTAAACGTC
AAGCGTTTAGTTGTTTAATTTACATGCAAATCTCGCGATTTGTGATAATTAACTACCGAAATGTGTGTTTGGGCTGCTAA
TTCATCCTTCTCGCTCCATATTAATTTGTCCATGTTACATGTGTGTAAATGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24082.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis