Browse Element(s) Details


OsAffx.24156.1.S1_at

Description tigr:9630.m00739
TID=OsAffx.24156.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0786011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07820Os.11392.2.S1_at11/112+4095838..4098077expressed protein
LOC_Os02g07830Os.50590.2.A1_at10/112+4103384..4105654Cation transport protein, expressed
LOC_Os02g07840Os.1502.1.S1_at11/112+4109767..4112676bZIP transcription factor family protein, expressed
LOC_Os02g07850OsAffx.11932.1.S1_x_at10/112+4112945..4115853hypothetical protein
LOC_Os02g07860OsAffx.24156.1.S1_at11/112+4117565..4118962hypothetical protein
LOC_Os02g07860OsAffx.24156.2.S1_at1/112+4117565..4118962hypothetical protein
LOC_Os02g07870Os.47485.1.S1_at11/112+4120170..4127530Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os02g07880Os.9124.1.S1_at11/112+4129132..4133816expressed protein
LOC_Os02g07890Os.11533.1.S1_at11/112+4134900..4135625expressed protein
LOC_Os02g07900Os.6353.1.S1_at11/112+4135894..4140379Clathrin assembly protein, putative, expressed
LOC_Os02g07910OsAffx.2543.1.S1_at11/112+4141503..4142223fiber protein Fb15, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24156.1.S1_at--281--7331Chr02:4118071..4118095 (25 bp)
GTGCATAGGACAGTCAATCCCCAAG
LOC_Os02g07860
OsAffx.24156.1.S1_at--128--3051Chr02:4118056..4118080 (25 bp)
AATCCCCAAGATGATGTTCTGCACG
LOC_Os02g07860
OsAffx.24156.1.S1_at--947--8171Chr02:4118028..4118052 (25 bp)
GGAAGCCGCCAGATCAGGGACTGAT
LOC_Os02g07860
OsAffx.24156.1.S1_at--271--6251Chr02:4117990..4118014 (25 bp)
GATGGTTCTTTTCAACCTGATACAG
LOC_Os02g07860
OsAffx.24156.1.S1_at--165--8631Chr02:4117953..4117977 (25 bp)
TGGGTGTGGTGCTCCGAAATAGACT
LOC_Os02g07860
OsAffx.24156.1.S1_at--884--9531Chr02:4117917..4117941 (25 bp)
TCTTTGCAGCTTGTGGTTACATCCA
LOC_Os02g07860
OsAffx.24156.1.S1_at--1101--10471Chr02:4117901..4117925 (25 bp)
TTACATCCAACGGTGCACAGGTGCT
LOC_Os02g07860
OsAffx.24156.1.S1_at--104--8531Chr02:4117825..4117849 (25 bp)
TGGACACTGCTACCGATCATCATAG
LOC_Os02g07860
OsAffx.24156.1.S1_at--191--9071Chr02:4117782..4117806 (25 bp)
TGCTGAATTTGCTCCAGTCCAAGGA
LOC_Os02g07860
OsAffx.24156.1.S1_at--729--7771Chr02:4117721..4117745 (25 bp)
GGTGCACGACCTCATGATGGGAAAC
LOC_Os02g07860
OsAffx.24156.1.S1_at--876--7991Chr02:4117622..4117646 (25 bp)
GGAGGAACTTACTCACTTCTGGCCA
LOC_Os02g07860
Target Sequence 
GTGCATAGGACAGTCAATCCCCAAGATGATGTTCTGCACGGATGGAAGCCGCCAGATCAGGGACTGATGAAGTTGAACAT
TGATGGTTCTTTTCAACCTGATACAGGGAAAGGCGGCCTGGGTGTGGTGCTCCGAAATAGACTAGGAGAAGTCATCTTTG
CAGCTTGTGGTTACATCCAACGGTGCACAGGTGCTCTAGAAGCGGAACTGATGGCGTGTCGGGAGGGATTACTTATGGCT
CTCCAATGGACACTGCTACCGATCATCATAGAAACTGATTGCCAGGAGATGCTGAATTTGCTCCAGTCCAAGGAGTTGGT
CCGATCGGAGTTGATGTTTTTAGTCAAGGAGGTGCACGACCTCATGATGGGAAACAGGGTTGTTAGTCTTGCTAAGGTGC
ATAGGAATCAAAACCGTATTAGTCATGTTTTAGCTAATAAAGGCCGAGTGGAGGAACTTACTCACTTCTGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis