Browse Element(s) Details


OsAffx.24176.1.S1_at

Description tigr:9630.m00887
TID=OsAffx.24176.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0971010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09660OsAffx.2554.1.S1_at11/112+4965201..4965467expressed protein
LOC_Os02g09670Os.50301.1.S1_at11/112+4966917..4973612expressed protein
LOC_Os02g09670Os.57116.1.S1_at10/112+4966917..4973612expressed protein
LOC_Os02g09670OsAffx.26564.3.S1_at10/112+4966917..4973612expressed protein
LOC_Os02g09690Os.51368.1.S1_at11/112+4974451..4984577expressed protein
LOC_Os02g09690Os.51722.1.S1_at11/112+4974451..4984577expressed protein
LOC_Os02g09690OsAffx.2557.1.S1_x_at10/112+4974451..4984577expressed protein
LOC_Os02g09690OsAffx.2557.1.S1_at10/112+4974451..4984577expressed protein
LOC_Os02g09710OsAffx.24176.1.S1_at10/112+4985040..4985860hypothetical protein
LOC_Os02g09720OsAffx.11961.1.S1_at3/112+4989053..4997675ABC transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24176.1.S1_at--101--2691Chr02:4985079..4985103 (25 bp)
AAGCTGGTGCTTGGATCGTTCATGA
LOC_Os02g09710
OsAffx.24176.1.S1_at--775--3971Chr02:4985104..4985128 (25 bp)
CGGTGTTTATGCACGCGGACATGGC
LOC_Os02g09710
OsAffx.24176.1.S1_at--676--3951Chr02:4985119..4985143 (25 bp)
CGGACATGGCAGACATGGTGTTCAT
LOC_Os02g09710
OsAffx.24176.1.S1_at--857--4311Chr02:4985154..4985178 (25 bp)
CCTTGCTCTTGGGTATCATCTATAG
LOC_Os02g09710
OsAffx.24176.1.S1_at--105--9551NONE
TCTATAGTTGTTAAGTTCCCTCGGA
NONE
OsAffx.24176.1.S1_at--613--9191Chr02:4985569..4985593 (25 bp)
TGCCATACATATCCTCGTCATCAAC
LOC_Os02g09710
OsAffx.24176.1.S1_at--539--9191Chr02:4985621..4985645 (25 bp)
TGCCACCGTTTGGTTGTCATCCACA
LOC_Os02g09710
OsAffx.24176.1.S1_at--321--4371Chr02:4985656..4985680 (25 bp)
CCACTGGACCTCAAGCTTCGTAAAG
LOC_Os02g09710
OsAffx.24176.1.S1_at--945--3231Chr02:4985667..4985691 (25 bp)
CAAGCTTCGTAAAGCCCCTAGGAAT
LOC_Os02g09710
OsAffx.24176.1.S1_at--329--671Chr02:4985765..4985789 (25 bp)
ATGAACGACGACGATCAGGGCGATC
LOC_Os02g09710
OsAffx.24176.1.S1_at--1109--9631Chr02:4985779..4985803 (25 bp)
TCAGGGCGATCTAAACAATGGAGTT
LOC_Os02g09710
Target Sequence 
AAGCTGGTGCTTGGATCGTTCATGACGGTGTTTATGCACGCGGACATGGCAGACATGGTGTTCATGGTGCTTGGCCCTTG
CTCTTGGGTATCATCTATAGTTGTTAAGTTCCCTCGGACCTCGGTCCTGCTCACTGCCATACATATCCTCGTCATCAACG
CCTCCTCCCATCACAACACCCTCTTCTGCCACCGTTTGGTTGTCATCCACACGTCGCCGGGCCACTGGACCTCAAGCTTC
GTAAAGCCCCTAGGAATGGCGGTGACTGGGAGCGAGAGCCTTAGGGTAGCGACGGGGGCCGGAGAGCTGGATGACCGCGG
CTGGGCAGAGATGAACGACGACGATCAGGGCGATCTAAACAATGGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis