Browse Element(s) Details


OsAffx.24177.1.S1_at

Description tigr:9630.m00889
TID=OsAffx.24177.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0973011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09720OsAffx.11961.1.S1_at3/112+4989053..4997675ABC transporter family protein, putative, expressed
LOC_Os02g09730OsAffx.24177.1.S1_at11/112+5014834..5017777hypothetical protein
LOC_Os02g09740Os.6254.1.S1_at11/112+5019762..5028025strubbelig receptor family 8, putative, expressed
LOC_Os02g09750OsAffx.11962.1.S1_at11/112+5028910..5030379Lycopene beta cyclase, chloroplast precursor, putative, expressed
LOC_Os02g09760OsAffx.2558.1.S1_at11/112+5033329..5034289expressed protein
LOC_Os02g09760OsAffx.2558.1.S1_s_at10/112+5033329..5034289expressed protein
LOC_Os02g09770Os.27546.1.A1_at11/112+5038908..5043308expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24177.1.S1_at--630--10431Chr02:5014869..5014889 (21 bp)
TTATCCTTACAAACCATCCAAATGG
LOC_Os02g09730
OsAffx.24177.1.S1_at--884--2431Chr02:5016663..5016687 (25 bp)
AAAATGTCAATCATGGAGGCTGCAA
LOC_Os02g09730
OsAffx.24177.1.S1_at--756--1331Chr02:5016696..5016720 (25 bp)
AGAGTTGGACAGTCCAGTCTGGACT
LOC_Os02g09730
OsAffx.24177.1.S1_at--232--4351Chr02:5016709..5016733 (25 bp)
CCAGTCTGGACTGGGCAGTGGACAA
LOC_Os02g09730
OsAffx.24177.1.S1_at--332--8271Chr02:5016722..5016744 (23 bp)
GGCAGTGGACAAAGCAGAAGGTTCA
LOC_Os02g09730
OsAffx.24177.1.S1_at--498--5271Chr02:5016928..5016950 (23 bp)
GAAGGTTCAGAAAATCGGCAGGAAT
LOC_Os02g09730
OsAffx.24177.1.S1_at--399--11Chr02:5016945..5016969 (25 bp)
AGGAATTGGACTGCGGCTAAGGTTC
LOC_Os02g09730
OsAffx.24177.1.S1_at--200--8971Chr02:5016962..5016986 (25 bp)
TAAGGTTCCCCCTGTGGTGGTATTG
LOC_Os02g09730
OsAffx.24177.1.S1_at--35--8571Chr02:5016985..5017004 (20 bp)
TGGTTTTACTACCACCCAAGCTTCT
LOC_Os02g09730
OsAffx.24177.1.S1_at--1129--5611Chr02:5017702..5017726 (25 bp)
GACACAACAAGACTACCAGGACCAA
LOC_Os02g09730
OsAffx.24177.1.S1_at--487--4311Chr02:5017717..5017741 (25 bp)
CCAGGACCAAAAGCCACAATTTCAG
LOC_Os02g09730
Target Sequence 
TTATCCTTACAAACCATCCAAATGGCCAAACAAAGCAGAAAAATGTCAATCATGGAGGCTGCAACAGCTTGAAGAGTTGG
ACAGTCCAGTCTGGACTGGGCAGTGGACAAAGCAGAAGGTTCAGAAAATCGGCAGGAATTGGACTGCGGCTAAGGTTCCC
CCTGTGGTGGTATTGGTTTTACTACCACCCAAGCTTCTTTCTTGGAAAGAAGATGACAAGACACAACAAGACTACCAGGA
CCAAAAGCCACAATTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24177.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis