Browse Element(s) Details


OsAffx.24269.1.S1_at

Description tigr:9630.m01467
TID=OsAffx.24269.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F20109 come from this gene.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1566011/11tetratricopeptide repeat, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15630Os.2741.4.S1_x_at11/112+8783919..8792096retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g15630OsAffx.2627.1.S1_at9/112+8783919..8792096retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g15640Os.21043.1.S1_at8/112+8801323..8805349AT-rich element binding factor 3, putative, expressed
LOC_Os02g15649NANA2+8808564..8808993NA
LOC_Os02g15660OsAffx.24269.1.S1_at11/112+8809965..8820959tetratricopeptide repeat, putative, expressed
LOC_Os02g15660Os.17360.1.A1_at10/112+8809965..8820959tetratricopeptide repeat, putative, expressed
LOC_Os02g15670NANA2+8824992..8825378expressed protein
LOC_Os02g15680OsAffx.2628.1.S1_at9/112+8829117..8829631hypothetical protein
LOC_Os02g15690Os.27198.1.S1_at11/112+8834266..8837490glycoside hydrolase family 28 protein, putative, expressed
LOC_Os02g15700Os.49774.1.S1_s_at11/112+8842946..8844247expressed protein
LOC_Os02g15700Os.54037.1.S1_s_at11/112+8842946..8844247expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24269.1.S1_at--965--2551Chr02:8811164..8811188 (25 bp)
AAGAGTCCCTTATGGTCCACGGTTG
LOC_Os02g15660
OsAffx.24269.1.S1_at--1057--9211Chr02:8811149..8811173 (25 bp)
TCCACGGTTGGCTGGAGGCTACAAC
LOC_Os02g15660
OsAffx.24269.1.S1_at--87--8311Chr02:8811133..8811157 (25 bp)
GGCTACAACAGATCAGGTCACCGTG
LOC_Os02g15660
OsAffx.24269.1.S1_at--121--9831Chr02:8811101..8811125 (25 bp)
TAACAAGTCTGCCTTGCCAAGCAGT
LOC_Os02g15660
OsAffx.24269.1.S1_at--111--1531Chr02:8811082..8811106 (25 bp)
AGCAGTGAAGGCCTTACCGAAGCAA
LOC_Os02g15660
OsAffx.24269.1.S1_at--293--7751Chr02:8811041..8811065 (25 bp)
GGTGATGAACCCTAACGCAGCCGAG
LOC_Os02g15660
OsAffx.24269.1.S1_at--459--5051Chr02:8811025..8811049 (25 bp)
GCAGCCGAGTTTGTGCCAGGTCAAT
LOC_Os02g15660
OsAffx.24269.1.S1_at--283--4411Chr02:8811011..8811035 (25 bp)
GCCAGGTCAATCTCGGAGTCCTAAT
LOC_Os02g15660
OsAffx.24269.1.S1_at--169--6111Chr02:8810996..8811020 (25 bp)
GAGTCCTAATGGCAACCCAGCATCT
LOC_Os02g15660
OsAffx.24269.1.S1_at--65--2391Chr02:8810969..8810993 (25 bp)
AAACGGACCTCTAGCATCACCAGGT
LOC_Os02g15660
OsAffx.24269.1.S1_at--473--391Chr02:8810954..8810978 (25 bp)
ATCACCAGGTGGCACTGAAGCTTCA
LOC_Os02g15660
Target Sequence 
AAGAGTCCCTTATGGTCCACGGTTGGCTGGAGGCTACAACAGATCAGGTCACCGTGGCCCTCGTAACAAGTCTGCCTTGC
CAAGCAGTGAAGGCCTTACCGAAGCAAACACATTTGCCACTAGGGTGATGAACCCTAACGCAGCCGAGTTTGTGCCAGGT
CAATCTCGGAGTCCTAATGGCAACCCAGCATCTCCAAACGGACCTCTAGCATCACCAGGTGGCACTGAAGCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24269.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis