Browse Element(s) Details


OsAffx.24322.1.S1_at

Description tigr:9630.m01835
TID=OsAffx.24322.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1924011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19210Os.17401.1.S1_at11/112+11199423..11205673WD-repeat protein 26, putative, expressed
LOC_Os02g19210Os.2427.1.S1_at1/112+11199423..11205673WD-repeat protein 26, putative, expressed
LOC_Os02g19220Os.27045.1.S1_a_at11/112+11209105..11217046expressed protein
LOC_Os02g19230OsAffx.12116.1.S1_at11/112+11223363..11225006hypothetical protein
LOC_Os02g19230OsAffx.15672.1.S1_x_at4/112+11223363..11225006hypothetical protein
LOC_Os02g19230OsAffx.15672.1.S1_at2/112+11223363..11225006hypothetical protein
LOC_Os02g19240OsAffx.24322.1.S1_at11/112+11227245..11227445hypothetical protein
LOC_Os02g19250OsAffx.31133.2.S1_at1/112+11227974..11230703transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24322.1.S1_at--389--8031Chr02:11227289..11227313 (25 bp)
GGAGGTGGAGTCTTCACATCCGACA
LOC_Os02g19240
OsAffx.24322.1.S1_at--1100--7711Chr02:11227292..11227316 (25 bp)
GGTGGAGTCTTCACATCCGACAGTG
LOC_Os02g19240
OsAffx.24322.1.S1_at--589--8031Chr02:11227295..11227319 (25 bp)
GGAGTCTTCACATCCGACAGTGGAG
LOC_Os02g19240
OsAffx.24322.1.S1_at--445--7151Chr02:11227298..11227322 (25 bp)
GTCTTCACATCCGACAGTGGAGCTA
LOC_Os02g19240
OsAffx.24322.1.S1_at--3--2111Chr02:11227304..11227328 (25 bp)
ACATCCGACAGTGGAGCTATCCCTT
LOC_Os02g19240
OsAffx.24322.1.S1_at--1012--5651Chr02:11227310..11227334 (25 bp)
GACAGTGGAGCTATCCCTTGCTATT
LOC_Os02g19240
OsAffx.24322.1.S1_at--14--3471Chr02:11227312..11227336 (25 bp)
CAGTGGAGCTATCCCTTGCTATTGT
LOC_Os02g19240
OsAffx.24322.1.S1_at--870--8071Chr02:11227316..11227340 (25 bp)
GGAGCTATCCCTTGCTATTGTGGTT
LOC_Os02g19240
OsAffx.24322.1.S1_at--838--7891Chr02:11227337..11227361 (25 bp)
GGTTGCTCCGAAACCAACGGTGCCG
LOC_Os02g19240
OsAffx.24322.1.S1_at--276--7771Chr02:11227355..11227379 (25 bp)
GGTGCCGCCGTCCAATGGTTCCGAC
LOC_Os02g19240
OsAffx.24322.1.S1_at--34--4491Chr02:11227361..11227385 (25 bp)
GCCGTCCAATGGTTCCGACAACGAC
LOC_Os02g19240
Target Sequence 
GGAGGTGGAGTCTTCACATCCGACAGTGGAGCTATCCCTTGCTATTGTGGTTGCTCCGAAACCAACGGTGCCGCCGTCCA
ATGGTTCCGACAACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis