Browse Element(s) Details


OsAffx.24410.1.S1_at

Description tigr:9630.m02307
TID=OsAffx.24410.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to nonspecific lipid-transfer protein 5 precursor (ltp 5). (rice
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2472010/11Nonspecific lipid-transfer protein 5 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24670NANA2+14302634..14308271retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24680Os.45161.1.A1_x_at6/112+14309077..14314123retrotransposon protein, putative, unclassified
LOC_Os02g24680OsAffx.22699.1.S1_x_at1/112+14309077..14314123retrotransposon protein, putative, unclassified
LOC_Os02g24690OsAffx.1196.1.S1_at2/112+14315756..14319332hypothetical protein
LOC_Os02g24690OsAffx.1196.1.S1_x_at1/112+14315756..14319332hypothetical protein
LOC_Os02g24700Os.8639.1.S1_at11/112+14327236..14328144auxin-induced protein TGSAUR12, putative, expressed
LOC_Os02g24710NANA2+14328976..14329413hypothetical protein
LOC_Os02g24720OsAffx.24410.1.S1_at10/112+14331198..14333118Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os02g24720OsAffx.24410.1.S1_x_at10/112+14331198..14333118Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os02g24720Os.28462.1.S1_s_at1/112+14331198..14333118Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os02g24720OsAffx.2442.1.S1_x_at1/112+14331198..14333118Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os02g24730NANA2+14335798..14341916retrotransposon protein, putative, unclassified
LOC_Os02g24740Os.23391.1.A1_at11/112+14349693..14350300Auxin-induced protein 10A5, putative, expressed
LOC_Os02g24750OsAffx.24411.1.S1_at10/112+14351070..14356277expressed protein
LOC_Os02g24750Os.53874.1.S1_at6/112+14351070..14356277expressed protein
LOC_Os02g24750Os.7074.1.S1_at4/112+14351070..14356277expressed protein
LOC_Os02g24760Os.20602.2.S1_x_at9/112+14357062..14357741Transposase, putative

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Gene Ontology Classification
GO idTypeName
GO:0006649biological_processphospholipid transfer to membrane
GO:0006869biological_processlipid transport
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005618cellular_componentcell wall
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0005516molecular_functioncalmodulin binding
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24410.1.S1_at--202--5731NONE
GACTGCTCCAGATCGACGGCAGCAA
NONE
OsAffx.24410.1.S1_at--361--9111Chr02:14332965..14332984 (20 bp)
TGCTCCAGATCGACGGCAGCAACAG
LOC_Os02g24720
OsAffx.24410.1.S1_at--486--4791Chr02:14332965..14332985 (21 bp)
GCTCCAGATCGACGGCAGCAACAGG
LOC_Os02g24720
OsAffx.24410.1.S1_at--24--3431Chr02:14332965..14332989 (25 bp)
CAGATCGACGGCAGCAACAGGTCAA
LOC_Os02g24720
OsAffx.24410.1.S1_at--757--6371Chr02:14332967..14332991 (25 bp)
GATCGACGGCAGCAACAGGTCAACA
LOC_Os02g24720
OsAffx.24410.1.S1_at--271--9371Chr02:14332969..14332993 (25 bp)
TCGACGGCAGCAACAGGTCAACAGC
LOC_Os02g24720
OsAffx.24410.1.S1_at--837--2491Chr02:14332994..14333018 (25 bp)
AACAGGCAGCCACTGGCGCCACCAT
LOC_Os02g24720
OsAffx.24410.1.S1_at--615--1731Chr02:14333014..14333038 (25 bp)
ACCATCGTCATCTCGACGGCCGAGT
LOC_Os02g24720
OsAffx.24410.1.S1_at--545--4331Chr02:14333015..14333039 (25 bp)
CCATCGTCATCTCGACGGCCGAGTT
LOC_Os02g24720
OsAffx.24410.1.S1_at--694--1891Chr02:14333029..14333053 (25 bp)
ACGGCCGAGTTCTCCTGCCCGGTGT
LOC_Os02g24720
OsAffx.24410.1.S1_at--133--4211Chr02:14333033..14333057 (25 bp)
CCGAGTTCTCCTGCCCGGTGTTGGA
LOC_Os02g24720
Target Sequence 
GACTGCTCCAGATCGACGGCAGCAACAGGTCAACAGCAACAGGCAGCCACTGGCGCCACCATCGTCATCTCGACGGCCGA
GTTCTCCTGCCCGGTGTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24410.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis