Browse Element(s) Details


OsAffx.24460.1.S1_at

Description tigr:9630.m02621
TID=OsAffx.24460.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2758011/11hypothetical protein
LOC_Os01g546405/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27540OsAffx.24458.2.S1_at11/112+16306055..16309173NB-ARC domain containing protein
LOC_Os02g27550OsAffx.12228.1.S1_at11/112+16314214..16314507hypothetical protein
LOC_Os02g27560OsAffx.24459.1.S1_at11/112+16315482..16316631hypothetical protein
LOC_Os02g27570OsAffx.29412.1.S1_at1/112+16318446..16323865retrotransposon protein, putative, unclassified
LOC_Os02g27580OsAffx.24460.1.S1_at11/112+16329284..16329888hypothetical protein
LOC_Os02g27590OsAffx.24461.1.S1_at11/112+16332893..16333886hypothetical protein
LOC_Os02g27600OsAffx.24462.1.S1_at11/112+16350227..16351996hypothetical protein
LOC_Os02g27610OsAffx.24463.1.S1_at11/112+16353155..16353574hypothetical protein
LOC_Os02g27620OsAffx.2768.1.S1_x_at11/112+16354213..16358456Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os02g27620Os.18140.1.S1_at9/112+16354213..16358456Endonuclease/Exonuclease/phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24460.1.S1_at--1146--8371Chr02:16329814..16329838 (25 bp)
GGCGAATGCATCTGAAGGCCCACTC
LOC_Os02g27580
OsAffx.24460.1.S1_at--730--5271Chr02:16329811..16329835 (25 bp)
GAATGCATCTGAAGGCCCACTCCTC
LOC_Os02g27580
OsAffx.24460.1.S1_at--663--2932Chr02:16329768..16329792 (25 bp)
AAGGCACCAAGCTCGAACGGCAGGC
LOC_Os02g27580
OsAffx.24460.1.S1_at--920--2692Chr02:16329760..16329784 (25 bp)
AAGCTCGAACGGCAGGCACCATGTC
LOC_Os02g27580
OsAffx.24460.1.S1_at--839--5452Chr02:16329754..16329778 (25 bp)
GAACGGCAGGCACCATGTCCTAGCG
LOC_Os02g27580
OsAffx.24460.1.S1_at--780--8252Chr02:16329746..16329770 (25 bp)
GGCACCATGTCCTAGCGGAGTCAGA
LOC_Os02g27580
OsAffx.24460.1.S1_at--441--3512Chr02:16329741..16329765 (25 bp)
CATGTCCTAGCGGAGTCAGAGGCAG
LOC_Os02g27580
OsAffx.24460.1.S1_at--844--9631Chr02:16329352..16329750 (25 bp)
TCAGAGGCAGGTGGTTTTGGACAAA
LOC_Os02g27580
OsAffx.24460.1.S1_at--792--7871Chr02:16329340..16329364 (25 bp)
GGTTTTGGACAAAGACTTGCAGCTG
LOC_Os02g27580
OsAffx.24460.1.S1_at--713--631Chr02:16329328..16329352 (25 bp)
AGACTTGCAGCTGTAACCGGGTTTC
LOC_Os02g27580
OsAffx.24460.1.S1_at--31--10691Chr02:16329324..16329348 (25 bp)
TTGCAGCTGTAACCGGGTTTCCTAG
LOC_Os02g27580
Target Sequence 
GGCGAATGCATCTGAAGGCCCACTCCTCTCTCCCCCAAGCGCCACCAAGGCACCAAGCTCGAACGGCAGGCACCATGTCC
TAGCGGAGTCAGAGGCAGGTGGTTTTGGACAAAGACTTGCAGCTGTAACCGGGTTTCCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis