Browse Element(s) Details


OsAffx.24509.1.S1_at

Description tigr:9630.m02894
TID=OsAffx.24509.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3025010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30210Os.28039.1.S1_at11/112+17952646..17955834beta scruin, putative, expressed
LOC_Os02g30219NANA2+17968142..17968511NA
LOC_Os02g30230Os.8406.1.S1_at11/112+17969446..17975001Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g30230Os.8406.1.S2_at11/112+17969446..17975001Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g30240Os.53579.1.S1_at11/112+17975638..17976666expressed protein
LOC_Os02g30250OsAffx.24509.1.S1_at10/112+17978830..17980172hypothetical protein
LOC_Os02g30260OsAffx.2804.1.S1_at11/112+17992391..17993035hypothetical protein
LOC_Os02g30270OsAffx.14013.1.S1_at10/112+17994511..17998120hypothetical protein
LOC_Os02g30270OsAffx.29554.1.S1_at1/112+17994511..17998120hypothetical protein
LOC_Os02g30270OsAffx.31267.1.S1_at1/112+17994511..17998120hypothetical protein
LOC_Os02g30270Os.57082.1.S1_at1/112+17994511..17998120hypothetical protein
LOC_Os02g30280OsAffx.24510.2.S1_at11/112+17999296..18000507hypothetical protein
LOC_Os02g30280OsAffx.24510.1.S1_x_at1/112+17999296..18000507hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24509.1.S1_at--629--1751Chr02:17978860..17978884 (25 bp)
ACCTCCCTCACAGAAGAAAACATAA
LOC_Os02g30250
OsAffx.24509.1.S1_at--553--5371Chr02:17978872..17978896 (25 bp)
GAAGAAAACATAACACCATTTCCAG
LOC_Os02g30250
OsAffx.24509.1.S1_at--131--191Chr02:17978889..17978913 (25 bp)
ATTTCCAGCTGAAAGAACACAACTA
LOC_Os02g30250
OsAffx.24509.1.S1_at--1160--3291Chr02:17978906..17979216 (25 bp)
CACAACTATATGATTTGGGCACCAT
LOC_Os02g30250
OsAffx.24509.1.S1_at--522--10111NONE
TATGATTTGGGCACCATGAAGTTTT
NONE
OsAffx.24509.1.S1_at--520--4251Chr02:17980016..17980040 (25 bp)
CCGTGCTCCGATTGCTGGTGATGGC
LOC_Os02g30250
OsAffx.24509.1.S1_at--488--4791Chr02:17980042..17980066 (25 bp)
GCTCCGACGAGCCAGCCAAGAGGCA
LOC_Os02g30250
OsAffx.24509.1.S1_at--790--6191Chr02:17980061..17980085 (25 bp)
GAGGCAGTGGACTGATCCGTCCTCT
LOC_Os02g30250
OsAffx.24509.1.S1_at--733--8851Chr02:17980073..17980097 (25 bp)
TGATCCGTCCTCTAATTCGAGCCAG
LOC_Os02g30250
OsAffx.24509.1.S1_at--390--9531Chr02:17980083..17980107 (25 bp)
TCTAATTCGAGCCAGGGTGAGGCCT
LOC_Os02g30250
OsAffx.24509.1.S1_at--797--3791Chr02:17980106..17980130 (25 bp)
CTCCTCTTCCTTGCTAAGGGTGAAA
LOC_Os02g30250
Target Sequence 
ACCTCCCTCACAGAAGAAAACATAACACCATTTCCAGCTGAAAGAACACAACTATATGATTTGGGCACCATGAAGTTTTG
CTCTGATTCGTCAGGCGGTGATGAGCCCCGTGCTCCGATTGCTGGTGATGGCGGCTCCGACGAGCCAGCCAAGAGGCAGT
GGACTGATCCGTCCTCTAATTCGAGCCAGGGTGAGGCCTCCTCTTCCTTGCTAAGGGTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24509.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis