Browse Element(s) Details


OsAffx.24540.1.S1_x_at

Description tigr:9630.m03084
TID=OsAffx.24540.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3255011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32520Os.11935.1.S1_at11/112+19245486..19250435ERD1 protein, chloroplast precursor, putative, expressed
LOC_Os02g32530Os.27096.1.S1_at11/112+19251050..19254173expressed protein
LOC_Os02g32530Os.39005.1.S1_s_at11/112+19251050..19254173expressed protein
LOC_Os02g32540Os.53774.1.S1_at10/112+19254317..19256331expressed protein
LOC_Os02g32550OsAffx.24540.1.S1_x_at11/112+19265567..19267344expressed protein
LOC_Os02g32560OsAffx.23314.1.S1_at2/112+19271177..19273284retrotransposon protein, putative, LINE subclass
LOC_Os02g32570Os.51680.1.A1_at11/112+19288880..19297378SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 2, putative, expressed
LOC_Os02g32570OsAffx.2831.1.S1_at9/112+19288880..19297378SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 2, putative, expressed
LOC_Os02g32570OsAffx.2831.1.S1_x_at9/112+19288880..19297378SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24540.1.S1_x_at--369--1371Chr02:19266275..19266299 (25 bp)
AGAGCCCGAGCCAGGTGTCGTCGTC
LOC_Os02g32550
OsAffx.24540.1.S1_x_at--895--9271Chr02:19266140..19266164 (25 bp)
TCCGGCGCGTCGAGTCCCAGCGCGA
LOC_Os02g32550
OsAffx.24540.1.S1_x_at--148--1671Chr02:19266116..19266140 (25 bp)
AGCCCAAGCCCAACAAGATGCGCGC
LOC_Os02g32550
OsAffx.24540.1.S1_x_at--248--5791Chr02:19266039..19266063 (25 bp)
GACGACGACGTGTACCAGCACCAGC
LOC_Os02g32550
OsAffx.24540.1.S1_x_at--960--1711Chr02:19266020..19266044 (25 bp)
ACCAGCACCGGATCAAGTGCGCGGG
LOC_Os02g32550
OsAffx.24540.1.S1_x_at--663--9251Chr02:19265967..19265991 (25 bp)
TCCTACTGGCTCTCCGCGGCAGAGG
LOC_Os02g32550
OsAffx.24540.1.S1_x_at--337--4131Chr02:19265914..19265938 (25 bp)
CGCGAGGAAGTTGGGCGGCCGGAGC
LOC_Os02g32550
OsAffx.24540.1.S1_x_at--91--3931Chr02:19265865..19265889 (25 bp)
CTGGCCAGCCCGATGAGGGCGCTGA
LOC_Os02g32550
OsAffx.24540.1.S1_x_at--324--1851Chr02:19265811..19265835 (25 bp)
ACGAAGACCATCACGGCCGTGCATT
LOC_Os02g32550
OsAffx.24540.1.S1_x_at--385--1951Chr02:19265799..19265823 (25 bp)
ACGGCCGTGCATTCCAGCCACGTCG
LOC_Os02g32550
OsAffx.24540.1.S1_x_at--192--7211Chr02:19265778..19265802 (25 bp)
GTCGTCGCGCACAGCAACGGCAGCA
LOC_Os02g32550
Target Sequence 
AGAGCCCGAGCCAGGTGTCGTCGTCGTCGTCCTTCGGGCGGAAGGTGGCGCGGTCGCGCTCCGTCGGGTGCGGCAGCCGC
AGCTTCTCCGGCGACTTCCTGGAGCGCATCTCCAACGGCTTCGGCGACTGCACGCTCCGGCGCGTCGAGTCCCAGCGCGA
GCCCAAGCCCAACAAGATGCGCGCGCTCGGCCACCTGGGCGGCGGCGGTGGCGGCGGCGCCGACGATGACGACGACGACG
ACGACGTGTACCAGCACCAGCACCGGATCAAGTGCGCGGGGTTCTTCGGCGGCATGGGCCCCACTCCCTCCTACTGGCTC
TCCGCGGCAGAGGGCGCTGCCACCGCCGGCGGCGTCGGCGGCGCGAGGAAGTTGGGCGGCCGGAGCCACCGGAGCTGGGC
GTGGACGGCGCTGGCCAGCCCGATGAGGGCGCTGAGGCCGACGAGCTCCACCACCACCACCACCACGAAGACCATCACGG
CCGTGCATTCCAGCCACGTCGTCGCGCACAGCAACGGCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24540.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis