Browse Element(s) Details


OsAffx.24548.1.S1_at

Description tigr:9630.m03124
TID=OsAffx.24548.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g329209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32870NANA2+19515861..19518461transposon protein, putative, unclassified
LOC_Os02g32880Os.46692.1.S1_at11/112+19519262..19530089retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g32880OsAffx.26549.1.S1_at1/112+19519262..19530089retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g32890NANA2+19530487..19532073transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g32900Os.25164.1.A1_at5/112+19534364..19535887hypothetical protein
LOC_Os02g32910NANA2+19536470..19537240hypothetical protein
LOC_Os02g32920OsAffx.24548.1.S1_x_at10/112+19541528..19542661hypothetical protein
LOC_Os02g32920OsAffx.24548.1.S1_at9/112+19541528..19542661hypothetical protein
LOC_Os02g32920OsAffx.22604.1.S1_x_at2/112+19541528..19542661hypothetical protein
LOC_Os02g32930Os.51859.1.S1_at10/112+19543869..19550278Sodium Bile acid symporter family protein, expressed
LOC_Os02g32940OsAffx.12322.1.S1_at11/112+19553842..19558982hypothetical protein
LOC_Os02g32950NANA2+19561764..19562928SELF-PRUNING protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24548.1.S1_at--246--4291NONE
CCTGCCACGTCGGTATCAGGCGATT
NONE
OsAffx.24548.1.S1_at--1070--3811NONE
CTGCCACGTCGGTATCAGGCGATTC
NONE
OsAffx.24548.1.S1_at--134--9891Chr02:19541775..19541799 (25 bp)
TACTTGCAAAGTATCAGGAGCCAGG
LOC_Os02g32920
OsAffx.24548.1.S1_at--784--2051Chr02:19541774..19541798 (25 bp)
ACTTGCAAAGTATCAGGAGCCAGGC
LOC_Os02g32920
OsAffx.24548.1.S1_at--814--8231Chr02:19541752..19541776 (25 bp)
GGCACCAAAAGCATCGTCGCCGGTG
LOC_Os02g32920
OsAffx.24548.1.S1_at--602--3371Chr02:19541750..19541774 (25 bp)
CACCAAAAGCATCGTCGCCGGTGAT
LOC_Os02g32920
OsAffx.24548.1.S1_at--537--4491Chr02:19541734..19541758 (25 bp)
GCCGGTGATCCCACCGTTCACGTCT
LOC_Os02g32920
OsAffx.24548.1.S1_at--496--1791Chr02:19541722..19541746 (25 bp)
ACCGTTCACGTCTCACGTCGGAGCT
LOC_Os02g32920
OsAffx.24548.1.S1_at--860--6751Chr02:19541719..19541743 (25 bp)
GTTCACGTCTCACGTCGGAGCTTGT
LOC_Os02g32920
OsAffx.24548.1.S1_at--1078--4691Chr02:19541689..19541713 (25 bp)
GCGGCGGCATCATCCACGGTCCACG
LOC_Os02g32920
OsAffx.24548.1.S1_at--874--3531Chr02:19541629..19541653 (25 bp)
CATCCATGTTCCACGTCAGAGCTCG
LOC_Os02g32920
Target Sequence 
CCTGCCACGTCGGTATCAGGCGATTCCTAGCACGTATCAGATGATACTTGCGAAGTATCAGGTGAAATCTATCAGGTATC
AGGCGATTCCTACCACGTATCAGGTGATACTAGCGAAGTATCAGGTGATACTTGCAAAGTATCAGGAGCCAGGCACCAAA
AGCATCGTCGCCGGTGATCCCACCGTTCACGTCTCACGTCGGAGCTTGTCACCGGCGGCGGCATCATCCACGGTCCACGC
CGGAGATCGTCACCGGCACGGCCACATCCTCCGCCATCCATGTTCCACGTCAGAGCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis