Browse Element(s) Details


OsAffx.24582.1.S1_at

Description tigr:9630.m03338
TID=OsAffx.24582.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3502011/11glycogenin-like starch initiation protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34990Os.53355.1.S1_at11/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990Os.53355.1.S1_s_at11/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990OsAffx.24581.1.S1_x_at10/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990Os.45967.1.A1_at2/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g35000Os.30962.1.S1_at11/112+20988470..20991249Chaperone protein dnaJ 10, putative, expressed
LOC_Os02g35010OsAffx.12356.1.S1_at11/112+20996624..21002341mitogen-activated kinase kinase kinase alpha, putative, expressed
LOC_Os02g35020OsAffx.24582.1.S1_at11/112+21008921..21012083glycogenin-like starch initiation protein, putative, expressed
LOC_Os02g35039Os.9639.1.S1_at11/112+21021861..21032924NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g35039OsAffx.12357.1.S1_at11/112+21021861..21032924NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g35039Os.57570.1.S1_at1/112+21021861..21032924NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g35060OsAffx.24583.1.S1_at11/112+21033759..21036768RNA methylase family UPF0020 containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24582.1.S1_at--464--2591Chr02:21009424..21009448 (25 bp)
AACGAGGTCTTCTCGTGGTGGCACC
LOC_Os02g35020
OsAffx.24582.1.S1_at--124--3271Chr02:21009383..21009407 (25 bp)
CAACTTCATGAAGCACTTCTGGGAG
LOC_Os02g35020
OsAffx.24582.1.S1_at--237--4251Chr02:21009288..21009312 (25 bp)
CCGTCCACTTCGTCGGGATGAAGCC
LOC_Os02g35020
OsAffx.24582.1.S1_at--361--7651Chr02:21009274..21009298 (25 bp)
GGGATGAAGCCGTGGTTCTGCTTCC
LOC_Os02g35020
OsAffx.24582.1.S1_at--1013--7491Chr02:21009263..21009287 (25 bp)
GTGGTTCTGCTTCCGCGACTACGAC
LOC_Os02g35020
OsAffx.24582.1.S1_at--1150--8511Chr02:21009232..21009256 (25 bp)
TGGAACTCGCCGCAGCTCAGGCAGT
LOC_Os02g35020
OsAffx.24582.1.S1_at--1012--1571Chr02:21009219..21009243 (25 bp)
AGCTCAGGCAGTTCGCCAGCGACGA
LOC_Os02g35020
OsAffx.24582.1.S1_at--407--9371Chr02:21009129..21009153 (25 bp)
TCGACGAGCGCCAGAAGGCGCTGCT
LOC_Os02g35020
OsAffx.24582.1.S1_at--242--4611Chr02:21009085..21009109 (25 bp)
GCGAGGGCGGCCAACTTCTCCGACG
LOC_Os02g35020
OsAffx.24582.1.S1_at--326--3251Chr02:21009074..21009098 (25 bp)
CAACTTCTCCGACGGCCACTGGAGG
LOC_Os02g35020
OsAffx.24582.1.S1_at--287--5371Chr02:21009064..21009088 (25 bp)
GACGGCCACTGGAGGGTCCCCATCG
LOC_Os02g35020
Target Sequence 
AACGAGGTCTTCTCGTGGTGGCACCGCCTCCCGTCGCACGCCAACTTCATGAAGCACTTCTGGGAGGGGGACTCCGGCGA
GCGGCTCGCCGCCGCCAGGCGCGCCGTGCTCGCCGCGGAGCCCGCCGTGGCCCTCGCCGTCCACTTCGTCGGGATGAAGC
CGTGGTTCTGCTTCCGCGACTACGACTGCAACTGGAACTCGCCGCAGCTCAGGCAGTTCGCCAGCGACGAGGCGCACGCG
CGGTGGTGGCGCGCGCACGACGCCATGCCGGCGGCGCTCCAGGGGTTCTGCCTGCTCGACGAGCGCCAGAAGGCGCTGCT
CCGGTGGGACGCCGCCGAGGCGAGGGCGGCCAACTTCTCCGACGGCCACTGGAGGGTCCCCATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24582.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis