Browse Element(s) Details


OsAffx.24600.1.S1_at

Description tigr:9630.m03489
TID=OsAffx.24600.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3654010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36490Os.21243.1.S1_at11/112+22032795..22036110expressed protein
LOC_Os02g36500Os.5798.1.S1_at10/112+22038030..22041031expressed protein
LOC_Os02g36510OsAffx.24599.1.S1_s_at11/112+22051059..22052742ETHYLENE-INSENSITIVE3-like 5 protein, putative, expressed
LOC_Os02g36510Os.55635.1.S1_at11/112+22051059..22052742ETHYLENE-INSENSITIVE3-like 5 protein, putative, expressed
LOC_Os02g36520Os.5656.1.S1_at11/112+22054965..22057498Kelch motif family protein, expressed
LOC_Os02g36530Os.50438.1.S1_at11/112+22059072..22059723expressed protein
LOC_Os02g36540OsAffx.24600.1.S1_at10/112+22059837..22061819hypothetical protein
LOC_Os02g36550Os.49268.1.S1_at11/112+22062145..22064814DNA/pantothenate metabolism flavoprotein, expressed
LOC_Os02g36560OsAffx.2880.1.S1_at11/112+22068125..22068794hypothetical protein
LOC_Os02g36570Os.11616.1.S1_at10/112+22071618..22079406ABC1 family protein, putative, expressed
LOC_Os02g36580OsAffx.2881.1.S1_at11/112+22084576..22085514hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24600.1.S1_at--80--3351NONE
CACGGGTGACCCAACAGATGTACTA
NONE
OsAffx.24600.1.S1_at--1020--6491Chr02:22060591..22060615 (25 bp)
GATAGATCCAGCAGTCCAAATTTCA
LOC_Os02g36540
OsAffx.24600.1.S1_at--330--3131Chr02:22060609..22060633 (25 bp)
AATTTCACAATTTGGCGCTTTTTGA
LOC_Os02g36540
OsAffx.24600.1.S1_at--192--10831Chr02:22060649..22060673 (25 bp)
TTGGTTCCAGCCGAAAACTATCACC
LOC_Os02g36540
OsAffx.24600.1.S1_at--870--3371Chr02:22060695..22060719 (25 bp)
CACCAGGTGCGATGGCGCTGAGATA
LOC_Os02g36540
OsAffx.24600.1.S1_at--319--9971Chr02:22060778..22060802 (25 bp)
TACCGGCGTCTGCTGACATGGGCAA
LOC_Os02g36540
OsAffx.24600.1.S1_at--128--5671Chr02:22060792..22060816 (25 bp)
GACATGGGCAACCTTAGCGCCAGAT
LOC_Os02g36540
OsAffx.24600.1.S1_at--29--8891Chr02:22060827..22060851 (25 bp)
TGAGGTGGGCCATTCCAGCGCCAGT
LOC_Os02g36540
OsAffx.24600.1.S1_at--439--9771Chr02:22061681..22061705 (25 bp)
TAAGGTCGCGAAGGTCAGCGCCGAT
LOC_Os02g36540
OsAffx.24600.1.S1_at--346--6611Chr02:22061709..22061733 (25 bp)
GTTGGCGCTGACATTTACCACGTGG
LOC_Os02g36540
OsAffx.24600.1.S1_at--1136--10851Chr02:22061752..22061776 (25 bp)
TTGGAGACAGCCGTCAGGACCTCAG
LOC_Os02g36540
Target Sequence 
CACGGGTGACCCAACAGATGTACTACTAGTAGAGCAGGATAGATCCAGCAGTCCAAATTTCACAATTTGGCGCTTTTTGA
AAACTTATTTCAAATTTGGTTCCAGCCGAAAACTATCACCAGATCTGGACCCCGGGCTCAGCACCAGGTGCGATGGCGCT
GAGATAAAACGCCTCAGCGCCAACCACGTCGGCGCTGAGGTCCTAACGGCCGTTTCTTTCGGTGTACCGGCGTCTGCTGA
CATGGGCAACCTTAGCGCCAGATGCATTGGCGCTGAGGTGGGCCATTCCAGCGCCAGTTTGATTGGCGCACCCCCCCTGA
GAGATGGGGAGGAGAGAGAGGGGAGGGCGCCGCCCCTTCTCAGCCGAGAGGAGCGAGGAGGAAGAAGGAGTGGCCTGGGG
CCGGCTCGGCCCCGAGGGATAAGGCGCGACCTCAGCGCCAGTCCCGTTGGCGCTAAGGTCGCGAAGGTCAGCGCCGATGC
GGTTGGCGCTGACATTTACCACGTGGGCCGTCTCGCTCCGCCGTTTGGAGACAGCCGTCAGGACCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis