Browse Element(s) Details


OsAffx.24678.1.S1_at

Description tigr:9632.m04226
TID=OsAffx.24678.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=MIP family channel proteins, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4406011/11Aquaporin PIP2.2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43990Os.5467.1.S1_at11/114+25855615..25856780expressed protein
LOC_Os04g44000NANA4+25860485..25865227transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g44010Os.14491.2.S1_x_at2/114+25865575..25867729transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g44010Os.47463.1.S1_x_at2/114+25865575..25867729transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g44020Os.57352.1.S1_at2/114+25868330..25868703expressed protein
LOC_Os04g44030Os.52693.1.S1_at11/114+25871571..25874685expressed protein
LOC_Os04g44050OsAffx.14262.1.S1_at11/114+25878628..25879919expressed protein
LOC_Os04g44060Os.5916.1.S1_s_at11/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44060OsAffx.24678.1.S1_at11/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44060Os.31191.2.S1_x_at1/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44070Os.53205.1.S1_at11/114+25884676..25886798expressed protein
LOC_Os04g44080NANA4+25887401..25887986hypothetical protein
LOC_Os04g44090Os.54162.1.S1_at11/114+25889081..25892266expressed protein
LOC_Os04g44100Os.53622.1.S1_at11/114+25892608..25894832expressed protein
LOC_Os04g44110Os.16890.1.S1_at11/114+25895663..25899284amidohydrolase family protein, expressed
LOC_Os04g44110Os.16890.1.S2_at11/114+25895663..25899284amidohydrolase family protein, expressed
LOC_Os04g44120NANA4+25899417..25899785expressed protein
LOC_Os04g44130OsAffx.26451.1.S1_at11/114+25901343..25901703Gamma-thionins family protein
LOC_Os04g44140OsAffx.30187.4.S1_at11/114+25903166..25903624hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006833biological_processwater transport
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24678.1.S1_at--666--9071Chr04:25881578..25881602 (25 bp)
TGCTTGCTCCTCTTCCAATTGGGTT
LOC_Os04g44060
OsAffx.24678.1.S1_at--234--10711Chr04:25881581..25881605 (25 bp)
TTGCTCCTCTTCCAATTGGGTTCGC
LOC_Os04g44060
OsAffx.24678.1.S1_at--170--9091Chr04:25881582..25881606 (25 bp)
TGCTCCTCTTCCAATTGGGTTCGCG
LOC_Os04g44060
OsAffx.24678.1.S1_at--1146--4131Chr04:25881603..25881627 (25 bp)
CGCGGTGTTCATGGTTCACTTGGCC
LOC_Os04g44060
OsAffx.24678.1.S1_at--150--7751Chr04:25881606..25881630 (25 bp)
GGTGTTCATGGTTCACTTGGCCACG
LOC_Os04g44060
OsAffx.24678.1.S1_at--299--7431Chr04:25881607..25881631 (25 bp)
GTGTTCATGGTTCACTTGGCCACGA
LOC_Os04g44060
OsAffx.24678.1.S1_at--661--8791Chr04:25881608..25881632 (25 bp)
TGTTCATGGTTCACTTGGCCACGAT
LOC_Os04g44060
OsAffx.24678.1.S1_at--209--6751Chr04:25881609..25881633 (25 bp)
GTTCATGGTTCACTTGGCCACGATC
LOC_Os04g44060
OsAffx.24678.1.S1_at--641--9631Chr04:25881611..25881635 (25 bp)
TCATGGTTCACTTGGCCACGATCCC
LOC_Os04g44060
OsAffx.24678.1.S1_at--838--6751Chr04:25881616..25881640 (25 bp)
GTTCACTTGGCCACGATCCCGATCA
LOC_Os04g44060
OsAffx.24678.1.S1_at--206--1791Chr04:25881656..25881680 (25 bp)
ACCCGGCAAGGAGCTTGGGAGCTGC
LOC_Os04g44060
Target Sequence 
TGCTTGCTCCTCTTCCAATTGGGTTCGCGGTGTTCATGGTTCACTTGGCCACGATCCCGATCACCGGCACCGGCATCAAC
CCGGCAAGGAGCTTGGGAGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24678.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis