Browse Element(s) Details


OsAffx.24723.1.S1_at

Description tigr:9630.m04308
TID=OsAffx.24723.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4453011/11expressed protein
LOC_Os01g060001/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44510Os.5900.1.S1_at10/112+26937222..26945553UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed
LOC_Os02g44510OsAffx.12492.1.S1_at10/112+26937222..26945553UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed
LOC_Os02g44510OsAffx.12492.1.S1_x_at10/112+26937222..26945553UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed
LOC_Os02g44520Os.27950.1.S1_a_at11/112+26947029..26964381Subtilase family protein, expressed
LOC_Os02g44520Os.27950.1.S2_a_at10/112+26947029..26964381Subtilase family protein, expressed
LOC_Os02g44530OsAffx.24723.1.S1_at11/112+26970100..26972364expressed protein
LOC_Os02g44540Os.49235.2.S1_x_at11/112+26976338..26981015expressed protein
LOC_Os02g44540Os.49235.1.S1_at10/112+26976338..26981015expressed protein
LOC_Os02g44540OsAffx.16132.1.S1_at1/112+26976338..26981015expressed protein
LOC_Os02g44550Os.52949.1.S1_s_at11/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44550Os.8062.1.S1_at11/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44550Os.8062.2.S1_x_at10/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44550Os.52949.1.S1_at1/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24723.1.S1_at--976--4391Chr02:26971035..26971059 (25 bp)
GCCAAAAATGGATCCAGCCTGCCTG
LOC_Os02g44530
OsAffx.24723.1.S1_at--664--1671Chr02:26971020..26971044 (25 bp)
AGCCTGCCTGCCATGAAGAAAATTC
LOC_Os02g44530
OsAffx.24723.1.S1_at--1134--7831Chr02:26970991..26971015 (25 bp)
GGTACAGCCATCCTCAAATGGCCAG
LOC_Os02g44530
OsAffx.24723.1.S1_at--234--6231Chr02:26970940..26970964 (25 bp)
GAGGCCTCAGGCAATGTTGTCACAA
LOC_Os02g44530
OsAffx.24723.1.S1_at--11--10811Chr02:26970924..26970948 (25 bp)
TTGTCACAAAGCCACGGGCAGCAGT
LOC_Os02g44530
OsAffx.24723.1.S1_at--664--5051Chr02:26970907..26970931 (25 bp)
GCAGCAGTCTCTGCAATCTCGGAAG
LOC_Os02g44530
OsAffx.24723.1.S1_at--347--5411Chr02:26970886..26970910 (25 bp)
GAAGCCTAAACCATCTCTCAATGGC
LOC_Os02g44530
OsAffx.24723.1.S1_at--404--7731Chr02:26970844..26970868 (25 bp)
GGTGTCAGCCCCATTAGCACAAAAA
LOC_Os02g44530
OsAffx.24723.1.S1_at--880--10652Chr02:26970652..26970832 (25 bp)
TTCCTCAAGACCTAAGCCATCAAGT
LOC_Os02g44530
OsAffx.24723.1.S1_at--68--1131Chr02:26970630..26970654 (25 bp)
AGTGCAGTTCACAACGATCACGGAA
LOC_Os02g44530
OsAffx.24723.1.S1_at--508--5271Chr02:26970427..26970542 (25 bp)
GAATGTTCAACTACAATCCTGCAAA
LOC_Os02g44530
Target Sequence 
GCCAAAAATGGATCCAGCCTGCCTGCCATGAAGAAAATTCAGAGGGTACAGCCATCCTCAAATGGCCAGAAGATGCAGCA
AACACTGCAGAGCAAGAGGCCTCAGGCAATGTTGTCACAAAGCCACGGGCAGCAGTCTCTGCAATCTCGGAAGCCTAAAC
CATCTCTCAATGGCCAGAATTTCAGGCAAAAGGTGTCAGCCCCATTAGCACAAAAACATTTGGCTCCTTCCTCAAGACCT
AAGCCATCAAGTGCAGTTCACAACGATCACGGAAAGGGAAAGACAAGGCGTTTAGTCAAAAGGAAATCTAAGGAGGATGG
ATGTGATGAAGAGGAAGTTGACTATAAATCAATCATCAGAGGAATGTTCAACTACAATCCTGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24723.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis