Browse Element(s) Details


OsAffx.2477.1.S1_x_at

Description tigr:9630.m00041
TID=OsAffx.2477.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to GT-2 factor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0138011/11expressed protein
LOC_Os03g135201/11Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os09g386401/11IBR domain containing protein, expressed
LOC_Os10g372401/11expressed protein
LOC_Os03g022401/11expressed protein
LOC_Os12g436601/11Leucine Rich Repeat family protein, expressed
LOC_Os02g433001/11expressed protein
LOC_Os04g457501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01360Os.10177.1.S1_at11/112+205428..207507expressed protein
LOC_Os02g01370OsAffx.24048.1.S1_at9/112+207750..209337hypothetical protein
LOC_Os02g01380Os.10797.1.S1_at11/112+219723..222114expressed protein
LOC_Os02g01380OsAffx.2477.1.S1_x_at11/112+219723..222114expressed protein
LOC_Os02g01390OsAffx.22492.1.S1_x_at1/112+230669..236824retrotransposon protein, putative, unclassified
LOC_Os02g01390OsAffx.22492.1.S1_at1/112+230669..236824retrotransposon protein, putative, unclassified
LOC_Os02g01400Os.31312.5.S1_x_at3/112+237453..240670retrotransposon protein, putative, unclassified
LOC_Os02g01400Os.31312.2.S1_x_at2/112+237453..240670retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2477.1.S1_x_at--326--2732Chr12:27091047..27091072 (23 bp)
AAGCACGAGGTGGAGGCGCTGATCC
LOC_Os12g43660
OsAffx.2477.1.S1_x_at--246--11Chr02:220520..220544 (25 bp)
ATAGGTTCCAGGAGCCAGGGCTGAA
LOC_Os02g01380
OsAffx.2477.1.S1_x_at--263--7495Chr10:19601235..19601259 (25 bp)
GTGGGAGAACATCAACAAGTACTTC
LOC_Os10g37240
OsAffx.2477.1.S1_x_at--363--3531Chr02:220408..220432 (25 bp)
CATCAACAAGTACTTCCGCAAGGCC
LOC_Os02g01380
OsAffx.2477.1.S1_x_at--547--3231Chr02:220351..220375 (25 bp)
CAAGACGTGCCCCTACTTCGACGAG
LOC_Os02g01380
OsAffx.2477.1.S1_x_at--625--1831Chr02:220223..220247 (25 bp)
ACGCGGTGGTGAAGTACCCAGACGT
LOC_Os02g01380
OsAffx.2477.1.S1_x_at--1159--2831Chr02:220212..220236 (25 bp)
AAGTACCCAGACGTGCGGTGCGCGC
LOC_Os02g01380
OsAffx.2477.1.S1_x_at--1074--1856Chr06:1011308..1011336 (23 bp)
ACGACGGCGACGAGGCGCACCATGA
NONE
OsAffx.2477.1.S1_x_at--939--891Chr02:220124..220148 (25 bp)
AGGCGCACCATGATGGCGACGGCGA
LOC_Os02g01380
OsAffx.2477.1.S1_x_at--1036--4031Chr02:220072..220096 (25 bp)
CGTTGGGAGAGCGACCGATGATCAT
LOC_Os02g01380
OsAffx.2477.1.S1_x_at--573--8051Chr02:220067..220091 (25 bp)
GGAGAGCGACCGATGATCATGACGA
LOC_Os02g01380
Target Sequence 
AAGCACGAGGTGGAGGCGCTGATCCGGGTGCGGACGGGGCTGGAGGATAGGTTCCAGGAGCCAGGGCTGAAGGGCCCCCT
GTGGGAGGAGGTGAGCGCGCGCATGGCGGCGGCGGGCTACCGGCGGAACGCGAAGCGGTGCAAGGAGAAGTGGGAGAACA
TCAACAAGTACTTCCGCAAGGCCAAGGAGAGCGGCAAGAAGCGGCCGGCGCACGCCAAGACGTGCCCCTACTTCGACGAG
CTCGACCGCCTCTACTCCCGCTCCGGCTCCGGCGGCGGTGGTGGGTCGTCCTCGGCGGGCGGCAATGGCGGGGAGGAGGC
GAAGGGCAGCTCGGAGCTGCTGGACGCGGTGGTGAAGTACCCAGACGTGCGGTGCGCGCCGCCGGGTTTCCCGTTCGACG
GGGAGCAGAACGAGGAAGGGAGGACGAAGGACGACGGCGACGAGGCGCACCATGATGGCGACGGCGACGGCGACGAGGAA
GACGTTGGCGTTGGCGTTGGGAGAGCGACCGATGATCATGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2477.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis