Browse Element(s) Details


OsAffx.24770.1.S1_x_at

Description tigr:9630.m04651
TID=OsAffx.24770.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4777011/11ZF-HD protein dimerisation region containing protein, expressed
LOC_Os12g106301/11ZF-HD protein dimerisation region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47730OsAffx.16451.1.A1_x_at2/112+29168472..29176129retrotransposon protein, putative, unclassified
LOC_Os02g47730Os.45161.1.A1_x_at1/112+29168472..29176129retrotransposon protein, putative, unclassified
LOC_Os02g47730OsAffx.22699.1.S1_x_at1/112+29168472..29176129retrotransposon protein, putative, unclassified
LOC_Os02g47730OsAffx.16451.1.A1_at1/112+29168472..29176129retrotransposon protein, putative, unclassified
LOC_Os02g47730OsAffx.828.1.S1_x_at1/112+29168472..29176129retrotransposon protein, putative, unclassified
LOC_Os02g47744OsAffx.24769.1.S1_s_at11/112+29184926..29189704Myb-related protein, putative, expressed
LOC_Os02g47744Os.48485.1.S1_at11/112+29184926..29189704Myb-related protein, putative, expressed
LOC_Os02g47744OsAffx.24769.1.S1_at3/112+29184926..29189704Myb-related protein, putative, expressed
LOC_Os02g47760Os.53523.1.A1_at11/112+29193278..29198438ATPase, AAA family protein, expressed
LOC_Os02g47760Os.52998.1.S1_x_at10/112+29193278..29198438ATPase, AAA family protein, expressed
LOC_Os02g47770OsAffx.24770.1.S1_x_at11/112+29200163..29202263ZF-HD protein dimerisation region containing protein, expressed
LOC_Os02g47770Os.49665.1.S1_at5/112+29200163..29202263ZF-HD protein dimerisation region containing protein, expressed
LOC_Os02g47780Os.50858.1.S1_at5/112+29218349..29220371hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os02g47790OsAffx.24771.1.S1_at11/112+29220945..29223212monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47790OsAffx.24771.1.S1_x_at11/112+29220945..29223212monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47800Os.20540.1.S1_at11/112+29224096..29228326monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47800OsAffx.24771.1.S1_x_at1/112+29224096..29228326monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24770.1.S1_x_at--517--5111Chr02:29201460..29201484 (25 bp)
GCACATGCAGAAGCGCCCGCCCGTC
LOC_Os02g47770
OsAffx.24770.1.S1_x_at--717--4211Chr02:29201407..29201431 (25 bp)
CCGCGCTGGCCGAGTCGTCAAGCGA
LOC_Os02g47770
OsAffx.24770.1.S1_x_at--164--6111Chr02:29201396..29201420 (25 bp)
GAGTCGTCAAGCGAGGAGCTGCGCC
LOC_Os02g47770
OsAffx.24770.1.S1_x_at--1019--3211Chr02:29201289..29201313 (25 bp)
CAAGAAGCGCTTCCGGACCAAGTTC
LOC_Os02g47770
OsAffx.24770.1.S1_x_at--892--3952Chr12:5675005..5675029 (25 bp)
CGGACCAAGTTCACGGCGGAGCAGA
LOC_Os12g10630
OsAffx.24770.1.S1_x_at--653--5891Chr02:29201249..29201273 (25 bp)
GAGCGGATGCGTGAATTCGCGCACC
LOC_Os02g47770
OsAffx.24770.1.S1_x_at--99--7991Chr02:29201245..29201269 (25 bp)
GGATGCGTGAATTCGCGCACCGCGT
LOC_Os02g47770
OsAffx.24770.1.S1_x_at--487--6351Chr02:29201244..29201268 (25 bp)
GATGCGTGAATTCGCGCACCGCGTC
LOC_Os02g47770
OsAffx.24770.1.S1_x_at--793--8991Chr02:29201238..29201262 (25 bp)
TGAATTCGCGCACCGCGTCGGGTGG
LOC_Os02g47770
OsAffx.24770.1.S1_x_at--905--7191Chr02:29201222..29201246 (25 bp)
GTCGGGTGGCGCATCCACAAGCCCG
LOC_Os02g47770
OsAffx.24770.1.S1_x_at--53--7231Chr02:29201186..29201210 (25 bp)
GTCGACGCGTTCTGCGCCCAGGTCG
LOC_Os02g47770
Target Sequence 
GCACATGCAGAAGCGCCCGCCCGTCCTCCCCGTGTCCCCGGCGTCTGCGCCCGCCGCGCTGGCCGAGTCGTCAAGCGAGG
AGCTGCGCCCGCCGCCGCTCCCCTCTTCCCACCCCCACGCGCACGCGGCCGCCGTGGTGGCGGCGTCGGCCTCCGCGCCG
CCGGGGCCGAGCAAGAAGCGCTTCCGGACCAAGTTCACGGCGGAGCAGAAGGAGCGGATGCGTGAATTCGCGCACCGCGT
CGGGTGGCGCATCCACAAGCCCGACGCCGCCGCCGTCGACGCGTTCTGCGCCCAGGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24770.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis