Browse Element(s) Details


OsAffx.24771.1.S1_at

Description tigr:9630.m04653
TID=OsAffx.24771.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4779011/11monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47760Os.53523.1.A1_at11/112+29193278..29198438ATPase, AAA family protein, expressed
LOC_Os02g47760Os.52998.1.S1_x_at10/112+29193278..29198438ATPase, AAA family protein, expressed
LOC_Os02g47770OsAffx.24770.1.S1_x_at11/112+29200163..29202263ZF-HD protein dimerisation region containing protein, expressed
LOC_Os02g47770Os.49665.1.S1_at5/112+29200163..29202263ZF-HD protein dimerisation region containing protein, expressed
LOC_Os02g47780Os.50858.1.S1_at5/112+29218349..29220371hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os02g47790OsAffx.24771.1.S1_at11/112+29220945..29223212monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47790OsAffx.24771.1.S1_x_at11/112+29220945..29223212monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47800Os.20540.1.S1_at11/112+29224096..29228326monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47800OsAffx.24771.1.S1_x_at1/112+29224096..29228326monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47810Os.46084.1.S1_at9/112+29232278..29235749Dof domain, zinc finger family protein, expressed
LOC_Os02g47820OsAffx.12541.1.S1_at6/112+29247356..29249090hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24771.1.S1_at--511--5451Chr02:29221518..29221542 (25 bp)
GAACGGACGGATGCAGGCGAGCGAC
LOC_Os02g47790
OsAffx.24771.1.S1_at--308--5951Chr02:29221421..29221445 (25 bp)
GAGCACGTCGACTGCGCGCGCCGGA
LOC_Os02g47790
OsAffx.24771.1.S1_at--989--7591Chr02:29221349..29221373 (25 bp)
GGGCACATCGACTACCTGCCATTCT
LOC_Os02g47790
OsAffx.24771.1.S1_at--739--2091Chr02:29221345..29221369 (25 bp)
ACATCGACTACCTGCCATTCTTCTA
LOC_Os02g47790
OsAffx.24771.1.S1_at--584--9911Chr02:29221322..29221346 (25 bp)
TACTCCAGGGTCTTCTCGCTGTCGT
LOC_Os02g47790
OsAffx.24771.1.S1_at--546--9571Chr02:29221312..29221336 (25 bp)
TCTTCTCGCTGTCGTGGCAGTTCTA
LOC_Os02g47790
OsAffx.24771.1.S1_at--78--3211Chr02:29221215..29221239 (25 bp)
CAAGTTCGGCGCGTACTGGGTCCGC
LOC_Os02g47790
OsAffx.24771.1.S1_at--461--4571Chr02:29221174..29221198 (25 bp)
GCGCGTTCCTCGAGGGCGGGAGCCG
LOC_Os02g47790
OsAffx.24771.1.S1_at--994--1311Chr02:29221081..29221105 (25 bp)
AGAGGCGAGGCCTCGCGTTCGCCAC
LOC_Os02g47790
OsAffx.24771.1.S1_at--516--7531Chr02:29221039..29221063 (25 bp)
GTGGCAAGCCCACCTGCGCATGGCA
LOC_Os02g47790
OsAffx.24771.1.S1_at--27--3651Chr02:29220975..29220999 (25 bp)
CTTCGCCTGCTGGTACGGCTGGCAG
LOC_Os02g47790
Target Sequence 
GAACGGACGGATGCAGGCGAGCGACGCCTCGGTGTACGCCGTGGGCGACGTGGCCGCGTTCCCCGTCAAGCTGTTCGGCG
GCGACGTCCGCCGGCTGGAGCACGTCGACTGCGCGCGCCGGACCGCGCGGCACGCCGTCGCGGCGATGCTGGAGGGCACC
GGATCGGTGGGGCACATCGACTACCTGCCATTCTTCTACTCCAGGGTCTTCTCGCTGTCGTGGCAGTTCTACGGCGACAA
CGCCGGGGAAGCCGTGCACTTCGGGGACCTCGCGCCGCCCGGCGACGGCGACGGCGCCGCCCCCAAGTTCGGCGCGTACT
GGGTCCGCGACGGCCGCGTCGCCGGCGCGTTCCTCGAGGGCGGGAGCCGGCAGGAGTACGAGGCCGTGGCGGCCGCCGTC
CGCCGCGGGGCCGCGGTGGCCGACGTCGCGGAGCTCGAGAGGCGAGGCCTCGCGTTCGCCACCCAGGCCACCGGCGGCGG
TGGCAAGCCCACCTGCGCATGGCACGCCACGGTGGGCGTCGCCGCGGCCGTGTCCATCGCCGCCTTCGCCTGCTGGTACG
GCTGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24771.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis