Browse Element(s) Details


OsAffx.24772.1.S1_x_at

Description tigr:9630.m04664
TID=OsAffx.24772.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4790011/11SET domain protein SDG117, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47860Os.5993.1.S1_at11/112+29271793..29277992Adenylate cyclase family protein, expressed
LOC_Os02g47860OsAffx.4387.1.S1_at1/112+29271793..29277992Adenylate cyclase family protein, expressed
LOC_Os02g47870Os.11012.1.S1_at8/112+29279108..29281654RING-box protein 1, putative, expressed
LOC_Os02g47880Os.8038.1.S1_at11/112+29281838..29285765Kinesin light chain, putative, expressed
LOC_Os02g47890Os.54767.1.S1_at11/112+29288705..29293635expressed protein
LOC_Os02g47900OsAffx.24772.1.S1_x_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47900Os.47321.1.S1_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47900OsAffx.24772.1.S1_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47910OsAffx.24773.1.S1_at9/112+29304483..29305300hypothetical protein
LOC_Os02g47920OsAffx.12542.1.S1_at11/112+29312762..29314803exonuclease family protein
LOC_Os02g47930Os.47881.1.S1_at11/112+29314620..29317124expressed protein
LOC_Os02g47940Os.16087.1.S1_at10/112+29318842..29322503Histidinol-phosphate aminotransferase, chloroplast precursor, putative, expressed
LOC_Os02g47950Os.56149.1.S1_at10/112+29324661..29325470expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016571biological_processhistone methylation
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008168molecular_functionmethyltransferase activity
GO:0008270molecular_functionzinc ion binding
GO:0042054molecular_functionhistone methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24772.1.S1_x_at--725--3611Chr02:29299808..29299832 (25 bp)
CTTGTGATGCCTCCTGTCAGAATAA
LOC_Os02g47900
OsAffx.24772.1.S1_x_at--391--8791Chr02:29300006..29300030 (25 bp)
TGTTAGAGCCGCAGAACCTATTCCA
LOC_Os02g47900
OsAffx.24772.1.S1_x_at--168--5431Chr02:29300019..29300043 (25 bp)
GAACCTATTCCACAGGGCACATTTG
LOC_Os02g47900
OsAffx.24772.1.S1_x_at--37--3131Chr02:29300158..29300178 (21 bp)
AATTTCTCCGGTGCATTCCATAAAC
LOC_Os02g47900
OsAffx.24772.1.S1_x_at--540--7851Chr02:29300376..29300400 (25 bp)
GGTAGCAGCTACTTGTTTGAAATCA
LOC_Os02g47900
OsAffx.24772.1.S1_x_at--699--1071Chr02:29300435..29300459 (25 bp)
AGGGACTACTGCATACGTGATTGAT
LOC_Os02g47900
OsAffx.24772.1.S1_x_at--521--6431Chr02:29300467..29300491 (25 bp)
GATATGGCAACGTATCCCGTTTTAT
LOC_Os02g47900
OsAffx.24772.1.S1_x_at--185--10211Chr02:29300489..29300652 (25 bp)
TATTAATCATAGCTGTTCCCCAAAT
LOC_Os02g47900
OsAffx.24772.1.S1_x_at--389--10131Chr02:29300643..29300667 (25 bp)
TTCCCCAAATCTCAGTACGCGTTTA
LOC_Os02g47900
OsAffx.24772.1.S1_x_at--1144--9471Chr02:29300652..29300676 (25 bp)
TCTCAGTACGCGTTTAGTTTCGGTG
LOC_Os02g47900
OsAffx.24772.1.S1_x_at--80--9671Chr02:29300691..29300715 (25 bp)
TCAGCTTGCGCACATTGGTTTGTTT
LOC_Os02g47900
Target Sequence 
CTTGTGATGCCTCCTGTCAGAATAAAGTACTGCAGAGAGGACTGCTGGTAAAGTTGGAAGTCTTCAGAACTGAGAATAAG
GGTTGGGCTGTTAGAGCCGCAGAACCTATTCCACAGGGCACATTTGTATGTGAGTACATTGGAGAGGTTTTGAAGATGAA
GGATGATGGGGCCATAAGACATGTAGAAAGGCTAGAAATCTATTGGAATTTCTCCGGTGCATTCCATAAACTGATAAGAA
AATTATTGGATCTCAGGGAGGCAAAAAGTGGTAGCAGCTACTTGTTTGAAATCACTTCTCAGATTGACAGGGAAAGAGTT
CAGACTACAGGGACTACTGCATACGTGATTGATGCCACAAGATATGGCAACGTATCCCGTTTTATTAATCATAGCTGTTC
CCCAAATCTCAGTACGCGTTTAGTTTCGGTGGAGAGCAAAGACTGTCAGCTTGCGCACATTGGTTTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24772.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis