Browse Element(s) Details


OsAffx.2480.1.S1_at

Description tigr:9630.m00074
TID=OsAffx.2480.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=diphosphomevalonate decarboxylase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0176010/11diphosphomevalonate decarboxylase family protein
LOC_Os02g019205/11diphosphomevalonate decarboxylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01720Os.20935.1.S1_at9/112+397365..403429expressed protein
LOC_Os02g01720OsAffx.28164.2.S1_at3/112+397365..403429expressed protein
LOC_Os02g01720Os.46481.2.S1_x_at1/112+397365..403429expressed protein
LOC_Os02g01720Os.52574.2.S1_x_at1/112+397365..403429expressed protein
LOC_Os02g01730NANA2+404247..406672Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative, expressed
LOC_Os02g01740Os.17297.1.S1_at11/112+410661..418491U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
LOC_Os02g01740OsAffx.24051.1.S1_x_at9/112+410661..418491U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
LOC_Os02g01750OsAffx.2479.1.S1_at11/112+419393..420208hypothetical protein
LOC_Os02g01760OsAffx.2480.1.S1_at10/112+420812..424850diphosphomevalonate decarboxylase family protein
LOC_Os02g01760OsAffx.16011.1.S1_at1/112+420812..424850diphosphomevalonate decarboxylase family protein
LOC_Os02g01770Os.9094.1.S1_at7/112+427311..428489hypothetical protein
LOC_Os02g01780OsAffx.24052.1.S1_at11/112+430227..430724hypothetical protein
LOC_Os02g01790Os.9094.1.S1_at11/112+432969..436157expressed protein
LOC_Os02g01790Os.9094.1.S2_s_at11/112+432969..436157expressed protein
LOC_Os02g01790Os.9094.1.S2_at8/112+432969..436157expressed protein
LOC_Os02g01800OsAffx.24926.1.S1_x_at11/112+442288..446000Leucine Rich Repeat family protein, expressed
LOC_Os02g01800OsAffx.24926.2.S1_at2/112+442288..446000Leucine Rich Repeat family protein, expressed
LOC_Os02g01810OsAffx.24054.1.S1_x_at8/112+448105..449790hypothetical protein
LOC_Os02g01810OsAffx.24054.1.S1_at8/112+448105..449790hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008610biological_processlipid biosynthesis
GO:0004163molecular_functiondiphosphomevalonate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2480.1.S1_at--593--1771Chr02:422890..422913 (24 bp)
ACCGGATGTGGCTCAACGGCAAGGA
LOC_Os02g01760
OsAffx.2480.1.S1_at--1033--2912Chr02:423355..423378 (24 bp)
AAGGAGATCTCCTTGTCAGGAGGGA
LOC_Os02g01760
OsAffx.2480.1.S1_at--1150--1351Chr02:423385..423409 (25 bp)
AGAGCTGCCTCAGGGAGATCCGGAA
LOC_Os02g01760
OsAffx.2480.1.S1_at--865--6372Chr02:423401..423425 (25 bp)
GATCCGGAAGCGTGCTCAAGATGTC
LOC_Os02g01760
OsAffx.2480.1.S1_at--437--2091Chr02:423484..423508 (25 bp)
ACATAGCATCGTACAACAACTTCCC
LOC_Os02g01760
OsAffx.2480.1.S1_at--274--1992Chr02:423510..423534 (25 bp)
ACTGCTGCTGGTTTGGCCTCTTCGG
LOC_Os02g01760
OsAffx.2480.1.S1_at--556--8451Chr02:423523..423547 (25 bp)
TGGCCTCTTCGGTTGCTGGCTTGGT
LOC_Os02g01760
OsAffx.2480.1.S1_at--307--10731NONE
TTGTTTTCACCCTTGGAAATCTAAT
NONE
OsAffx.2480.1.S1_at--516--7772Chr02:423778..423801 (24 bp)
GGTGAACTTTCTTCCATAGCAAGGC
LOC_Os02g01760
OsAffx.2480.1.S1_at--534--2512Chr02:424086..424110 (25 bp)
AACTTGCTGATGAGGCACACTGGAA
LOC_Os02g01760
OsAffx.2480.1.S1_at--982--291Chr02:424127..424349 (25 bp)
ATAGCAGTGGTCAGTTCAAAGCAGA
LOC_Os02g01760
Target Sequence 
ACCGGATGTGGCTCAACGGCAAGGAGATCTCCTTGTCAGGAGGGAGGTTCCAGAGCTGCCTCAGGGAGATCCGGAAGCGT
GCTCAAGATGTCGAGGATGAGAAGAAGGGGATCAGGATCAAGAAAGAGGACTGGGGGAAGCTACATGTACACATAGCATC
GTACAACAACTTCCCCACTGCTGCTGGTTTGGCCTCTTCGGTTGCTGGCTTGGTTTGTTTTGTTTTCACCCTTGGAAATC
TAATGAATGTGAAAGAAGATTATGGTGAACTTTCTTCCATAGCAAGGCAAGGGTCTGGAAGTGCATGCCGCAGTATATAT
GGGGGATTCGTGAAATGGTGTATGGGAAAAAATAATGATGGAAGTGACAGCATAGCTGTACAACTTGCTGATGAGGCACA
CTGGAATGATCTTGTTATTATCATAGCAGTGGTCAGTTCAAAGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2480.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis