Browse Element(s) Details


OsAffx.24844.1.S1_at

Description tigr:9630.m05261
TID=OsAffx.24844.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5323011/11KOW motif family protein, expressed
LOC_Os11g307401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g177301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g336091/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g286001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g154301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g251701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g237601/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53180Os.12268.1.S1_at11/112+32552766..325567821-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed
LOC_Os02g53200OsAffx.12622.1.A1_at11/112+32561185..32564173Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g53200Os.11714.1.S1_at10/112+32561185..32564173Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g53210Os.14402.1.S1_at11/112+32569455..32574680expressed protein
LOC_Os02g53220OsAffx.3053.1.S1_at10/112+32576818..32577731hypothetical protein
LOC_Os02g53230OsAffx.24844.1.S1_at11/112+32578698..32585503KOW motif family protein, expressed
LOC_Os02g53240NANA2+32586273..32586846hypothetical protein
LOC_Os02g53250OsAffx.24845.1.S1_at11/112+32589606..32589956expressed protein
LOC_Os02g53260Os.53232.1.S1_at11/112+32591624..32594464acetyltransferase, GNAT family protein, expressed
LOC_Os02g53260Os.49440.1.S1_x_at4/112+32591624..32594464acetyltransferase, GNAT family protein, expressed
LOC_Os02g53270Os.20428.1.S1_at11/112+32596272..32605201expressed protein
LOC_Os02g53280OsAffx.12623.1.S1_at11/112+32605828..32608480expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
GO:0003700molecular_functiontranscription factor activity
GO:0016986molecular_functiontranscription initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24844.1.S1_at--678--5191Chr02:32584652..32584711 (25 bp)
GCAATCAATGCCAGGAACTCCAGTT
LOC_Os02g53230
OsAffx.24844.1.S1_at--176--8011Chr02:32584745..32584769 (25 bp)
GGATGGGCTGTTACACCTGGAGTTA
LOC_Os02g53230
OsAffx.24844.1.S1_at--468--10031Chr02:32584768..32584792 (25 bp)
TAGTTTCGGTGATGCCTCCGGAAAA
LOC_Os02g53230
OsAffx.24844.1.S1_at--60--271Chr02:32584804..32584828 (25 bp)
ATATGCAACTCCAACACCTAGTGGG
LOC_Os02g53230
OsAffx.24844.1.S1_at--1065--2991Chr02:32584834..32584858 (25 bp)
AATGACCCCAAATCCTGCATCATAT
LOC_Os02g53230
OsAffx.24844.1.S1_at--287--7831Chr02:32584877..32584901 (25 bp)
GGTCAGCCCATGACTCTGGGTTATA
LOC_Os02g53230
OsAffx.24844.1.S1_at--1156--7931Chr02:32584909..32584933 (25 bp)
GGATATAATGTCTCCTGCCATAGGT
LOC_Os02g53230
OsAffx.24844.1.S1_at--866--1011Chr02:32585121..32585145 (25 bp)
AGGTTATGATACCACCTGCGGTGTG
LOC_Os02g53230
OsAffx.24844.1.S1_at--683--97710Chr11:17394569..17394622 (24 bp)
TAAGGAAGTCCTCCCGGATGGATCT
LOC_Os11g30740
OsAffx.24844.1.S1_at--710--351Chr02:32585360..32585384 (25 bp)
ATAATGTCTGGGTCTTGGCGTGGAC
LOC_Os02g53230
OsAffx.24844.1.S1_at--1159--2231Chr02:32585393..32585417 (25 bp)
AAATTGCTGGGAGTCGACGGATCTG
LOC_Os02g53230
Target Sequence 
GCAATCAATGCCAGGAACTCCAGTTCCCCAGCCACACGAAGCCCCCACCCCTGGGTCAGGATGGGCTGTTACACCTGGAG
TTAGTTTCGGTGATGCCTCCGGAAAAAATCCAAGCTCATATGCAACTCCAACACCTAGTGGGCAACCAATGACCCCAAAT
CCTGCATCATATCTCCCGAGCACACCTGGTGGTCAGCCCATGACTCTGGGTTATATTGAAATGGATATAATGTCTCCTGC
CATAGGTGAGGAGGGCGGTAGGAACTGGCTTTTACCAGATGTTTTGGTCAATGTGCTCAGGGAAGGTTATGATACCACCT
GCGGTGTGGTTAAGGAAGTCCTCCCGGATGGATCTTGCCGCGTCGCACTTGGGTCGTCAGGCAGCGGGGATGAAATAACT
GCTTTTCCAAACGAGTTTGAGGTTGTCAAGCCTAAGAAGAACGACAAGCTAAAGATAATGTCTGGGTCTTGGCGTGGACT
CACGGGGAAATTGCTGGGAGTCGACGGATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis