Browse Element(s) Details


OsAffx.24852.1.S1_at

Description tigr:9630.m05284
TID=OsAffx.24852.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5344011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53384Os.50960.1.S1_at11/112+32672899..32675300expressed protein
LOC_Os02g53384Os.50960.2.S1_x_at10/112+32672899..32675300expressed protein
LOC_Os02g53390OsAffx.24851.1.S1_x_at11/112+32675760..32676080hypothetical protein
LOC_Os02g53390OsAffx.24851.1.S1_at11/112+32675760..32676080hypothetical protein
LOC_Os02g53400OsAffx.3056.1.S1_at10/112+32678281..32680037expressed protein
LOC_Os02g53410Os.16435.1.S1_at11/112+32680222..32680955expressed protein
LOC_Os02g53420Os.10873.1.S1_at10/112+32682738..32687169Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os02g53430Os.56994.1.S1_at10/112+32689595..32691716DNA-3-methyladenine glycosylase, putative, expressed
LOC_Os02g53440OsAffx.24852.1.S1_at11/112+32693011..32694182expressed protein
LOC_Os02g53450Os.19414.1.S1_a_at11/112+32694564..32698762expressed protein
LOC_Os02g53450Os.20829.1.S1_at1/112+32694564..32698762expressed protein
LOC_Os02g53470NANA2+32705140..32709525retrotransposon protein, putative, unclassified
LOC_Os02g53480OsAffx.12625.1.S1_at11/112+32711190..32712443hypothetical protein
LOC_Os02g53490Os.18637.1.S1_at11/112+32715133..32717511Metal tolerance protein C3, putative, expressed
LOC_Os02g53500Os.2212.1.S1_at11/112+32717469..32721689Activator 1 36 kDa subunit, putative, expressed
LOC_Os02g53500Os.51090.1.S1_at1/112+32717469..32721689Activator 1 36 kDa subunit, putative, expressed
LOC_Os02g53500OsAffx.30917.1.S1_at1/112+32717469..32721689Activator 1 36 kDa subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24852.1.S1_at--607--3211Chr02:32693848..32693872 (25 bp)
CAAAACACGGGCTCTACTTTGCGGT
LOC_Os02g53440
OsAffx.24852.1.S1_at--1015--3791Chr02:32693810..32693834 (25 bp)
CTCGCTCTTCCAATATGTTTCATCA
LOC_Os02g53440
OsAffx.24852.1.S1_at--567--10151Chr02:32693461..32693497 (25 bp)
TATCGAGGTCGCTCTATATCCATCA
LOC_Os02g53440
OsAffx.24852.1.S1_at--624--2491Chr02:32693361..32693385 (25 bp)
AACATCGGGCTCTGCACAATATCAA
LOC_Os02g53440
OsAffx.24852.1.S1_at--620--2591Chr02:32693298..32693322 (25 bp)
AACGAGAACCTGAACCTGCTGAGTC
LOC_Os02g53440
OsAffx.24852.1.S1_at--698--8431Chr02:32693231..32693255 (25 bp)
GGCCATCACCCAAGACCATTATTGA
LOC_Os02g53440
OsAffx.24852.1.S1_at--582--6071Chr02:32693202..32693226 (25 bp)
GAGTTTGTGCTGTCCACCAAGTCGA
LOC_Os02g53440
OsAffx.24852.1.S1_at--724--2831Chr02:32693184..32693208 (25 bp)
AAGTCGACACTCTACGGGCCGAGGC
LOC_Os02g53440
OsAffx.24852.1.S1_at--168--6251Chr02:32693133..32693157 (25 bp)
GATGGAGGCACTATCACTCGCTATA
LOC_Os02g53440
OsAffx.24852.1.S1_at--478--832Chr02:32712425..32712491 (25 bp)
ATGGAGCATCCGTACGAGTTGTTCA
NONE
OsAffx.24852.1.S1_at--1089--6051Chr02:32693075..32693099 (25 bp)
GAGTTGTTCAATTGTCTCCACCAAA
LOC_Os02g53440
Target Sequence 
CAAAACACGGGCTCTACTTTGCGGTTCCGCCTCTCCACCTCGCTCTTCCAATATGTTTCATCAAACCCGAAATTATCGAG
GTCGCTCTATATCCATCACCCCCATCAAGCGAAGGAACCATAGGGCCAACATATGACGCAGAAGCTAGCGCGGCAAGAGC
AATGGTGGAGCTAAACATCGGGCTCTGCACAATATCAATGCCGTTGTGGATGCGGCCGAGGCATGTGATTGTGTCCAACG
AGAACCTGAACCTGCTGAGTCCTCCTACGACGACGACCACTCGCCATGGAGATGGAGGTCAAGGGCCATCACCCAAGACC
ATTATTGACACCGAGTTTGTGCTGTCCACCAAGTCGACACTCTACGGGCCGAGGCTAGGAACGGACGGTCACCTGTGGAT
GGATGGAGGCACTATCACTCGCTATACAGGGTACACAGAAATCGATGGAGCATCCGTACGAGTTGTTCAATTGTCTCCAC
CAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24852.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis