Browse Element(s) Details


OsAffx.24870.1.S1_at

Description tigr:9630.m05426
TID=OsAffx.24870.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=HSP101-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5472011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54650Os.20201.1.S1_at10/112+33470359..33478115diacylglycerol kinase, putative, expressed
LOC_Os02g54670OsAffx.24869.1.S1_at11/112+33481156..33482630hypothetical protein
LOC_Os02g54680OsAffx.12642.1.S1_at11/112+33483091..33483588hypothetical protein
LOC_Os02g54690OsAffx.3073.1.S1_at11/112+33485746..33487000initiation factor 3g, putative, expressed
LOC_Os02g54700Os.10955.1.S1_at11/112+33487552..33489978RNA recognition motif family protein, expressed
LOC_Os02g54710Os.32465.1.S1_at11/112+33490132..33492293expressed protein
LOC_Os02g54720OsAffx.24870.1.S1_at11/112+33496773..33499893hypothetical protein
LOC_Os02g54730Os.47600.1.S1_s_at11/112+33506102..33511848Transmembrane amino acid transporter protein, expressed
LOC_Os02g54730Os.47600.2.S1_x_at10/112+33506102..33511848Transmembrane amino acid transporter protein, expressed
LOC_Os02g54740OsAffx.15069.1.S1_at5/112+33512656..33517341retrotransposon protein, putative, unclassified
LOC_Os02g54740OsAffx.13657.1.S1_at1/112+33512656..33517341retrotransposon protein, putative, unclassified
LOC_Os02g54750NANA2+33520186..33520692retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g54760OsAffx.3074.1.S1_at11/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760Os.10910.1.A1_at11/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760Os.22706.1.S1_at7/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760OsAffx.15320.1.S1_x_at1/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24870.1.S1_at--853--6591Chr02:33497331..33497355 (25 bp)
GTTGAAACCGCGCAAAGACTCGCCT
LOC_Os02g54720
OsAffx.24870.1.S1_at--929--771Chr02:33497279..33497303 (25 bp)
ATGTGCGAGGATCACACCGACGACG
LOC_Os02g54720
OsAffx.24870.1.S1_at--910--6171Chr02:33497240..33497264 (25 bp)
GAGGAATCCCGGAACTCGTCCAGTG
LOC_Os02g54720
OsAffx.24870.1.S1_at--1082--1991Chr02:33497227..33497251 (25 bp)
ACTCGTCCAGTGACCTAACGGTGGA
LOC_Os02g54720
OsAffx.24870.1.S1_at--132--5951Chr02:33497204..33497228 (25 bp)
GAGCACGAGCAGGAGTACGGCCAAC
LOC_Os02g54720
OsAffx.24870.1.S1_at--1134--5891Chr02:33497135..33497159 (25 bp)
GAGCTCACCAAAGCCGTGGATGCAA
LOC_Os02g54720
OsAffx.24870.1.S1_at--947--7971Chr02:33497118..33497142 (25 bp)
GGATGCAACGGTGGTGTTCAAGCCC
LOC_Os02g54720
OsAffx.24870.1.S1_at--70--2371Chr02:33497075..33497099 (25 bp)
AAACGGAGCGTCTCCGACGTGGTCT
LOC_Os02g54720
OsAffx.24870.1.S1_at--918--7711Chr02:33497015..33497039 (25 bp)
GGTTTGTCCGTACACGTCGACGACG
LOC_Os02g54720
OsAffx.24870.1.S1_at--765--7291Chr02:33496908..33496932 (25 bp)
GTGCCCTACCATACGGCAGCTGAAA
LOC_Os02g54720
OsAffx.24870.1.S1_at--618--10011Chr02:33496881..33496905 (25 bp)
TAGCTTGAGCGCCAACGATGTCGAC
LOC_Os02g54720
Target Sequence 
GTTGAAACCGCGCAAAGACTCGCCTCCGCTTCACCTTGACCTGAACCTGTCCATGTGCGAGGATCACACCGACGACGACG
ACAGCGGCGGCGAGGAATCCCGGAACTCGTCCAGTGACCTAACGGTGGAGCACGAGCAGGAGTACGGCCAACCCGCCGCT
GCCGCCGCCAAGTTCTCGGCTCCGTCGAGCTTCTCCGAGCTCACCAAAGCCGTGGATGCAACGGTGGTGTTCAAGCCCGT
CGACTTCGGGCCGCTCAAACGGAGCGTCTCCGACGTGGTCTCGGCGAAGCTCGGGGACGCCGCCGGCGCCGGCGCCGGTT
TGTCCGTACACGTCGACGACGGCGTGCTGGACAGGCTGGCCGGCGCGGCGTGGACGGCGGGAGAGTCAGCCACGTCGTTG
GAGGCGTGGGCCGACGAGGTGCTGTGCCCTACCATACGGCAGCTGAAACGTAGCTTGAGCGCCAACGATGTCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24870.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis