Browse Element(s) Details


OsAffx.24876.1.S1_at

Description tigr:9630.m05470
TID=OsAffx.24876.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5511011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55060Os.12840.1.S1_at11/112+33721218..33721942Steroid binding protein 3, putative, expressed
LOC_Os02g55070OsAffx.24875.1.S1_at11/112+33723898..33727785hypothetical protein
LOC_Os02g55080Os.9439.1.S1_at11/112+33728531..33731460expressed protein
LOC_Os02g55090Os.15626.1.S1_at11/112+33732816..33736381expressed protein
LOC_Os02g55090Os.55228.1.S1_at11/112+33732816..33736381expressed protein
LOC_Os02g55100OsAffx.12649.1.S1_at10/112+33739123..33741024hypothetical protein
LOC_Os02g55110Os.21370.1.S1_at11/112+33745993..33752342expressed protein
LOC_Os02g55110OsAffx.24876.1.S1_at11/112+33745993..33752342expressed protein
LOC_Os02g55120Os.27119.1.S1_at10/112+33753148..33756764Translation initiation factor IF-3, C-terminal domain containing protein, expressed
LOC_Os02g55130Os.10548.2.S1_at11/112+33763429..33770197Serine carboxypeptidase II precursor, putative, expressed
LOC_Os02g55130Os.10548.1.S1_s_at11/112+33763429..33770197Serine carboxypeptidase II precursor, putative, expressed
LOC_Os02g55140Os.5433.1.S1_at11/112+33773392..33776827Cytosol aminopeptidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24876.1.S1_at--1158--9151Chr02:33749531..33749555 (25 bp)
TGCGCCTCCTATATAACAGGAGCTT
LOC_Os02g55110
OsAffx.24876.1.S1_at--106--10171Chr02:33749540..33749564 (25 bp)
TATATAACAGGAGCTTGCAATGGCG
LOC_Os02g55110
OsAffx.24876.1.S1_at--1115--2951Chr02:33749558..33749582 (25 bp)
AATGGCGCTTTACAAATGCTTACGT
LOC_Os02g55110
OsAffx.24876.1.S1_at--386--8331Chr02:33749561..33749585 (25 bp)
GGCGCTTTACAAATGCTTACGTAGA
LOC_Os02g55110
OsAffx.24876.1.S1_at--803--4891Chr02:33749575..33749599 (25 bp)
GCTTACGTAGATGAAATGCAATCAG
LOC_Os02g55110
OsAffx.24876.1.S1_at--693--5191Chr02:33749592..33749616 (25 bp)
GCAATCAGTTCAGAAGATGAGTGCT
LOC_Os02g55110
OsAffx.24876.1.S1_at--155--6311Chr02:33749607..33749866 (25 bp)
GATGAGTGCTGAGACTATGCTCTAC
LOC_Os02g55110
OsAffx.24876.1.S1_at--986--5691Chr02:33749854..33749878 (25 bp)
GACTATGCTCTACAGCGTATGGGAT
LOC_Os02g55110
OsAffx.24876.1.S1_at--68--6931Chr02:33749870..33749894 (25 bp)
GTATGGGATGCTAACTCCAGCCTGT
LOC_Os02g55110
OsAffx.24876.1.S1_at--1022--2531Chr02:33749882..33749906 (25 bp)
AACTCCAGCCTGTGCGATTCTATGG
LOC_Os02g55110
OsAffx.24876.1.S1_at--1139--4471Chr02:33749889..33749913 (25 bp)
GCCTGTGCGATTCTATGGTTATGAA
LOC_Os02g55110
Target Sequence 
TGCGCCTCCTATATAACAGGAGCTTGCAATGGCGCTTTACAAATGCTTACGTAGATGAAATGCAATCAGTTCAGAAGATG
AGTGCTGAGACTATGCTCTACAGCGTATGGGATGCTAACTCCAGCCTGTGCGATTCTATGGTTATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24876.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis