Browse Element(s) Details


OsAffx.24897.1.S1_at

Description tigr:9630.m05625
TID=OsAffx.24897.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g566709/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56630OsAffx.12670.1.S1_at11/112+34714997..34717490Calcium binding EGF domain containing protein
LOC_Os02g56640NANA2+34720740..34724177retrotransposon protein, putative, unclassified
LOC_Os02g56650OsAffx.22492.1.S1_at1/112+34724875..34726653retrotransposon protein, putative, unclassified
LOC_Os02g56650OsAffx.22492.1.S1_x_at1/112+34724875..34726653retrotransposon protein, putative, unclassified
LOC_Os02g56660Os.31312.5.S1_x_at4/112+34727274..34730692retrotransposon protein, putative, unclassified
LOC_Os02g56660Os.31312.2.S1_x_at2/112+34727274..34730692retrotransposon protein, putative, unclassified
LOC_Os02g56670OsAffx.24897.1.S1_at9/112+34733944..34735265hypothetical protein
LOC_Os02g56680Os.6757.1.S1_at1/112+34736625..34738103NmrA-like family protein, expressed
LOC_Os02g56680OsAffx.24898.2.S1_at1/112+34736625..34738103NmrA-like family protein, expressed
LOC_Os02g56690OsAffx.24898.2.S1_at11/112+34751789..34753269NAD dependent epimerase/dehydratase family protein
LOC_Os02g56700OsAffx.24898.1.S1_at11/112+34758482..34760768NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g56700Os.20154.1.S1_at11/112+34758482..34760768NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24897.1.S1_at--530--5951Chr02:34734019..34734043 (25 bp)
GAGAACCGGGTCGTCTCCGTAGCCG
LOC_Os02g56670
OsAffx.24897.1.S1_at--460--7151NONE
GTCTCCGTAGCCGACGGTGATAAAT
NONE
OsAffx.24897.1.S1_at--902--1651NONE
AGCCGACGGTGATAAATTGGAGCTT
NONE
OsAffx.24897.1.S1_at--1070--2511Chr02:34735120..34735144 (25 bp)
AACTTGCTCTTAGAGTTGCTCCCGA
LOC_Os02g56670
OsAffx.24897.1.S1_at--82--10731Chr02:34735123..34735147 (25 bp)
TTGCTCTTAGAGTTGCTCCCGATCG
LOC_Os02g56670
OsAffx.24897.1.S1_at--297--3671Chr02:34735128..34735152 (25 bp)
CTTAGAGTTGCTCCCGATCGGCTGG
LOC_Os02g56670
OsAffx.24897.1.S1_at--1118--6051Chr02:34735132..34735156 (25 bp)
GAGTTGCTCCCGATCGGCTGGCGCT
LOC_Os02g56670
OsAffx.24897.1.S1_at--211--9312Chr02:34735156..34735180 (25 bp)
TCGCCCACCGGGTGACGCAAGCAGG
LOC_Os02g56670
OsAffx.24897.1.S1_at--281--931Chr02:34735178..34735202 (25 bp)
AGGCAGCAGCCGACACGAGCCGTCA
LOC_Os02g56670
OsAffx.24897.1.S1_at--756--5072Chr02:34735183..34735207 (25 bp)
GCAGCCGACACGAGCCGTCAAAAAG
LOC_Os02g56670
OsAffx.24897.1.S1_at--168--4232Chr02:34735196..34735220 (25 bp)
GCCGTCAAAAAGGTTGGCGTTGCCA
LOC_Os02g56670
Target Sequence 
GAGAACCGGGTCGTCTCCGTAGCCGACGGTGATAAATTGGAGCTTGTAGTGGGCTATACTGTTAAACTTGCTCTTAGAGT
TGCTCCCGATCGGCTGGCGCTCGCCCACCGGGTGACGCAAGCAGGCAGCAGCCGACACGAGCCGTCAAAAAGGTTGGCGT
TGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24897.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis