Browse Element(s) Details


OsAffx.24898.1.S1_at

Description tigr:9630.m05628
TID=OsAffx.24898.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cinnamoyl CoA reductase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5670011/11NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g161101/11Serine/threonine protein phosphatase PP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56670OsAffx.24897.1.S1_at9/112+34733944..34735265hypothetical protein
LOC_Os02g56680Os.6757.1.S1_at1/112+34736625..34738103NmrA-like family protein, expressed
LOC_Os02g56680OsAffx.24898.2.S1_at1/112+34736625..34738103NmrA-like family protein, expressed
LOC_Os02g56690OsAffx.24898.2.S1_at11/112+34751789..34753269NAD dependent epimerase/dehydratase family protein
LOC_Os02g56700OsAffx.24898.1.S1_at11/112+34758482..34760768NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g56700Os.20154.1.S1_at11/112+34758482..34760768NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g56710NANA2+34761583..34761991hypothetical protein
LOC_Os02g56720Os.55206.1.A1_at11/112+34763775..34765299NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g56730Os.40360.1.S1_at9/112+34769347..34772576hypothetical protein
LOC_Os02g56730Os.40360.1.S1_x_at8/112+34769347..34772576hypothetical protein
LOC_Os02g56730Os.40855.5.S1_x_at3/112+34769347..34772576hypothetical protein
LOC_Os02g56740Os.10826.1.S1_at11/112+34778302..34787518Nucleotidyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0009809biological_processlignin biosynthesis
GO:0000164cellular_componentprotein phosphatase type 1 complex
GO:0000163molecular_functionprotein phosphatase type 1 activity
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24898.1.S1_at--983--7073Chr09:12629396..12629436 (24 bp)
GTCACTTCAAAGTACGTACTCCCTC
NONE
OsAffx.24898.1.S1_at--26--2271Chr02:34759720..34759744 (25 bp)
AAATCTAGACATGGGTATCCTCTGT
LOC_Os02g56700
OsAffx.24898.1.S1_at--64--6911Chr02:34759734..34759758 (25 bp)
GTATCCTCTGTCTCAAAACCTTATA
LOC_Os02g56700
OsAffx.24898.1.S1_at--1056--8893Chr12:11054634..11054709 (25 bp)
TGAGATATATTCTAGCACAACGAAT
NONE
OsAffx.24898.1.S1_at--790--5671Chr02:34759792..34759816 (25 bp)
GACATATCCATATCTAGATTTGTTG
LOC_Os02g56700
OsAffx.24898.1.S1_at--742--2231Chr02:34759836..34759860 (25 bp)
ACAATTTTTACACTACTCCAACCAT
LOC_Os02g56700
OsAffx.24898.1.S1_at--1115--3311Chr02:34759846..34759870 (25 bp)
CACTACTCCAACCATCCTATAAAAA
LOC_Os02g56700
OsAffx.24898.1.S1_at--784--2631Chr02:34759870..34759894 (25 bp)
AACCAATCTGTTAGACTAGTAGAAC
LOC_Os02g56700
OsAffx.24898.1.S1_at--179--100311Chr08:26093422..26093442 (21 bp)
TAGAACACATCCTATTACTACGAAT
NONE
OsAffx.24898.1.S1_at--859--3711Chr02:34759906..34759930 (25 bp)
CTACGAATCCGGACATACATATATT
LOC_Os02g56700
OsAffx.24898.1.S1_at--1070--6531Chr02:34759933..34759957 (25 bp)
GATTTATAGTATTAGGGCTGTCTTT
LOC_Os02g56700
Target Sequence 
GTCACTTCAAAGTACGTACTCCCTCCGTCTTAAAATATAACAAGGTTATACTAGATGGAGTCTGGATGAGATATATTCTA
GTACATCAAATCTAGACATGGGTATCCTCTGTCTCAAAACCTTATATTGGATGAGATATATTCTAGCACAACGAATCTAG
ACATATCCATATCTAGATTTGTTGTACTATGATGGAGAGAGTAACAATTTTTACACTACTCCAACCATCCTATAAAAAAC
CAATCTGTTAGACTAGTAGAACACATCCTATTACTACGAATCCGGACATACATATATTAAGATTTATAGTATTAGGGCTG
TCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis