Browse Element(s) Details


OsAffx.24904.1.S1_at

Description tigr:9630.m05707
TID=OsAffx.24904.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5733011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57290Os.35294.1.S1_at11/112+35085325..35093422Cytochrome P450 family protein, expressed
LOC_Os02g57300OsAffx.3092.1.S1_at11/112+35094388..35094906hypothetical protein
LOC_Os02g57310Os.53629.1.S1_x_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.35493.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.51470.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.53629.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57330OsAffx.24904.1.S1_at11/112+35114296..35116876expressed protein
LOC_Os02g57340OsAffx.12679.1.S1_at11/112+35117042..35120427pentatricopeptide, putative, expressed
LOC_Os02g57350Os.55392.1.S1_at11/112+35124805..35126008heavy metal-associated domain containing protein, expressed
LOC_Os02g57360OsAffx.24905.1.S1_at11/112+35127243..35129219heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24904.1.S1_at--612--491Chr02:35115464..35115488 (25 bp)
ATCGGCTCTGTCACCGTTGCAGAAT
LOC_Os02g57330
OsAffx.24904.1.S1_at--189--9791Chr02:35115415..35115439 (25 bp)
TAAGAGCTGTTGATCCTCCATTCGA
LOC_Os02g57330
OsAffx.24904.1.S1_at--801--6371Chr02:35115404..35115428 (25 bp)
GATCCTCCATTCGATTACATCATTG
LOC_Os02g57330
OsAffx.24904.1.S1_at--604--5491Chr02:35114907..35114931 (25 bp)
GAACATCTGTTGCAACCTCTAATGG
LOC_Os02g57330
OsAffx.24904.1.S1_at--572--3191Chr02:35114879..35114903 (25 bp)
CAATCATTGCATTATCTGGTCCTAA
LOC_Os02g57330
OsAffx.24904.1.S1_at--219--6731Chr02:35114743..35114767 (25 bp)
GTTCTACCACTGTCCATGAACAGAT
LOC_Os02g57330
OsAffx.24904.1.S1_at--1050--2651Chr02:35114498..35114522 (25 bp)
AAGCGACATTGATCCCTGAGGTCAG
LOC_Os02g57330
OsAffx.24904.1.S1_at--165--8891Chr02:35114482..35114506 (25 bp)
TGAGGTCAGCGATAACGGCAACAAC
LOC_Os02g57330
OsAffx.24904.1.S1_at--1010--8011Chr02:35114449..35114473 (25 bp)
GGAGGTTGTCTCCAATCCAGGAGAT
LOC_Os02g57330
OsAffx.24904.1.S1_at--122--6131Chr02:35114404..35114428 (25 bp)
GAGTGGTGGACCTTGTACTGGCTCA
LOC_Os02g57330
OsAffx.24904.1.S1_at--758--6991Chr02:35114390..35114414 (25 bp)
GTACTGGCTCAGTGGATTCAGCAGA
LOC_Os02g57330
Target Sequence 
ATCGGCTCTGTCACCGTTGCAGAATTGGACTGGGGTAACAAAGATCATATAAGAGCTGTTGATCCTCCATTCGATTACAT
CATTGGAACTGATGTTGTTTATTCAGAACATCTGTTGCAACCTCTAATGGAGACAATCATTGCATTATCTGGTCCTAAAA
CAAAAATAATGCTAGGATACGAGATCCGTTCTACCACTGTCCATGAACAGATGATGCAAATGTGGAAAAGCAATTTTAAT
GTGAAAACCGTCTCGAAATCGAAGATGGATGTGAAATACCAACATCCTAGTATTCATCTTTACATAATGGACCCCAAAGC
GACATTGATCCCTGAGGTCAGCGATAACGGCAACAACGAGGAGGAGGAGGTTGTCTCCAATCCAGGAGATGATGAAGATC
CTGGAGCTGAGAGTGGTGGACCTTGTACTGGCTCAGTGGATTCAGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis