Browse Element(s) Details


OsAffx.24905.1.S1_at

Description tigr:9630.m05710
TID=OsAffx.24905.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BT004613 At5g60800
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5736011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57310Os.53629.1.S1_x_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.35493.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.51470.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.53629.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57330OsAffx.24904.1.S1_at11/112+35114296..35116876expressed protein
LOC_Os02g57340OsAffx.12679.1.S1_at11/112+35117042..35120427pentatricopeptide, putative, expressed
LOC_Os02g57350Os.55392.1.S1_at11/112+35124805..35126008heavy metal-associated domain containing protein, expressed
LOC_Os02g57360OsAffx.24905.1.S1_at11/112+35127243..35129219heavy metal-associated domain containing protein, expressed
LOC_Os02g57370Os.8132.1.S1_at11/112+35149792..35152853Zinc finger DHHC domain containing protein 15 homolog, putative, expressed
LOC_Os02g57380Os.54214.1.S1_at11/112+35153098..35155675Thioredoxin-like 8, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0005507molecular_functioncopper ion binding
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24905.1.S1_at--814--2211Chr02:35127867..35127891 (25 bp)
ACAAGGCCAACGAATGCGACGGCAA
LOC_Os02g57360
OsAffx.24905.1.S1_at--369--991Chr02:35127972..35127996 (25 bp)
AGGAGGAGCAAGACGATCAGAAGAA
LOC_Os02g57360
OsAffx.24905.1.S1_at--1098--5611Chr02:35128010..35128030 (21 bp)
GACAACAAGAAACCCGTCGTGCCGG
LOC_Os02g57360
OsAffx.24905.1.S1_at--532--7291Chr02:35128700..35128724 (25 bp)
GTGCCTGGGACGGTGGTGCTCAAGA
LOC_Os02g57360
OsAffx.24905.1.S1_at--273--5751Chr02:35128748..35128772 (25 bp)
GACGGCTGCATGAACCGCATCCGCA
LOC_Os02g57360
OsAffx.24905.1.S1_at--140--3251Chr02:35128774..35128794 (21 bp)
CAAGCTCTTCCACATCCAAGGAGTG
LOC_Os02g57360
OsAffx.24905.1.S1_at--300--5751Chr02:35128922..35128946 (25 bp)
GACGGTGACCGGGACCATGGACATC
LOC_Os02g57360
OsAffx.24905.1.S1_at--617--1731Chr02:35128935..35128959 (25 bp)
ACCATGGACATCAAGGCCCTGCCGG
LOC_Os02g57360
OsAffx.24905.1.S1_at--878--2071Chr02:35128942..35128966 (25 bp)
ACATCAAGGCCCTGCCGGAGAAGCT
LOC_Os02g57360
OsAffx.24905.1.S1_at--747--7291Chr02:35128998..35129022 (25 bp)
GTGCCGCCGGGCAAGCAGAAGGACA
LOC_Os02g57360
OsAffx.24905.1.S1_at--599--10571Chr02:35129142..35129166 (25 bp)
TTCTACGACCAGCAGGCGCTGCTCG
LOC_Os02g57360
Target Sequence 
ACAAGGCCAACGAATGCGACGGCAAGCCGGCGGACAAGAAGCAGCAGCAGCAGGAGGACGACGGCGACGAGGCGGGGAAG
GAAGACAAGAAGAAGAAGAAGGAGAAGGAGGAGCAAGACGATCAGAAGAAGAAGAAGGCCAAGGACAACAAGAAACCCGT
CGTGCCGGTGCCTGGGACGGTGGTGCTCAAGATCGGCGCCGTCGGCCTCCACTGCGACGGCTGCATGAACCGCATCCGCA
CCAAGCTCTTCCACATCCAAGGAGTGGAGCAGGTGGCCATGGAGATGGCCAAGAACCAGGTGACGGTGACCGGGACCATG
GACATCAAGGCCCTGCCGGAGAAGCTCCGCAAGAAGCTGCGCCGCCCCGTCGACGTCGTGCCGCCGGGCAAGCAGAAGGA
CAAGGACGGCGGCAAGGACAAGGACAAGGAGAAGCAGGACGGTGGCAAGGACGGCGGCGGCGGCGGCAAGGACGCGGCGG
CGAAGGCGCTGACGGCGGAGAAGGAGGCGTGGAAGGCGGCGTTCTACGACCAGCAGGCGCTGCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24905.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis