Browse Element(s) Details


OsAffx.24907.1.S1_at

Description tigr:9630.m05736
TID=OsAffx.24907.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5758011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57530Os.8423.1.S1_a_at11/112+35245712..35249336His Kinase A domain containing protein, expressed
LOC_Os02g57540Os.6282.1.S1_at11/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57540Os.7054.1.S1_a_at1/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57540Os.7054.2.S1_x_at1/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57550OsAffx.12680.1.S1_at11/112+35255389..35255976hypothetical protein
LOC_Os02g57560Os.49855.1.S1_at11/112+35257337..35259524Protein kinase domain containing protein, expressed
LOC_Os02g57560OsAffx.30454.1.S1_x_at1/112+35257337..35259524Protein kinase domain containing protein, expressed
LOC_Os02g57570OsAffx.24906.1.S1_x_at11/112+35261791..35262961MatE family protein
LOC_Os02g57570OsAffx.24906.1.S1_at11/112+35261791..35262961MatE family protein
LOC_Os02g57580OsAffx.24907.1.S1_at11/112+35263349..35264388hypothetical protein
LOC_Os02g57580Os.9626.2.S1_x_at1/112+35263349..35264388hypothetical protein
LOC_Os02g57590Os.53192.1.S1_s_at11/112+35265730..35268909Fibrillarin-2, putative, expressed
LOC_Os02g57590Os.47666.1.S1_at11/112+35265730..35268909Fibrillarin-2, putative, expressed
LOC_Os02g57600Os.10392.1.S1_at11/112+35269321..35272692expressed protein
LOC_Os02g57600OsAffx.31551.1.S1_at1/112+35269321..35272692expressed protein
LOC_Os02g57610Os.19574.1.S1_at11/112+35274698..35278609hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g57620Os.19186.1.S1_at11/112+35280919..35284836expressed protein
LOC_Os02g57630Os.7211.1.S1_a_at11/112+35287543..35290686Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24907.1.S1_at--149--9571Chr02:35263443..35263467 (25 bp)
TCTTCACCGGAGACAGGCACCTGCA
LOC_Os02g57580
OsAffx.24907.1.S1_at--322--9611Chr02:35263533..35263557 (25 bp)
TCATCTCAGGCAACCATTCACATCT
LOC_Os02g57580
OsAffx.24907.1.S1_at--494--131Chr02:35263548..35263572 (25 bp)
ATTCACATCTCAGCACTTCATCATA
LOC_Os02g57580
OsAffx.24907.1.S1_at--409--5111Chr02:35263560..35263584 (25 bp)
GCACTTCATCATATACTACCTCCAT
LOC_Os02g57580
OsAffx.24907.1.S1_at--856--9231Chr02:35263580..35263890 (25 bp)
TCCATTTCGAAATGTGTGGCGGTCG
LOC_Os02g57580
OsAffx.24907.1.S1_at--540--10491Chr02:35263921..35263945 (25 bp)
TTAATCTGGCGTGTTACTACGGCTT
LOC_Os02g57580
OsAffx.24907.1.S1_at--617--9311Chr02:35263951..35263975 (25 bp)
TCCCTCTCGGCTTCATATTTGGCTA
LOC_Os02g57580
OsAffx.24907.1.S1_at--631--231Chr02:35263965..35263989 (25 bp)
ATATTTGGCTACCTCTTCAGATGGG
LOC_Os02g57580
OsAffx.24907.1.S1_at--617--3011Chr02:35264139..35264163 (25 bp)
AATGCAGACGGCCATCCTCATGTAC
LOC_Os02g57580
OsAffx.24907.1.S1_at--850--3751Chr02:35264155..35264179 (25 bp)
CTCATGTACATGGTCTGCAAAACTG
LOC_Os02g57580
OsAffx.24907.1.S1_at--1125--2711Chr02:35264186..35264312 (25 bp)
AAGCAGAGTCAGTGCAAGCGTTGGA
LOC_Os02g57580
Target Sequence 
TCTTCACCGGAGACAGGCACCTGCAGAAGGCGGTGGCCAACATCGCCTACATGCTCGCCGTCACCATGGTGCTCAACAGC
ATCCAGCCCGTCATCTCAGGCAACCATTCACATCTCAGCACTTCATCATATACTACCTCCATTTCGAAATGTGTGGCGGT
CGGCGGCGGATGGCAGGGAGTGGTGGCGTACATTAATCTGGCGTGTTACTACGGCTTCGGCCTCCCTCTCGGCTTCATAT
TTGGCTACCTCTTCAGATGGGGTGTGAAGGGCATTTGGGCTGGCATGTTGTGTGGGACGGCAATGCAGACGGCCATCCTC
ATGTACATGGTCTGCAAAACTGACTGGGAAGCAGAGTCAGTGCAAGCGTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis