Browse Element(s) Details


OsAffx.24915.1.S1_at

Description tigr:9630.m05788
TID=OsAffx.24915.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5801010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57960OsAffx.3098.1.S1_at11/112+35492353..35495167Leucine Rich Repeat family protein
LOC_Os02g57960Os.23175.1.S1_at1/112+35492353..35495167Leucine Rich Repeat family protein
LOC_Os02g57970OsAffx.24913.1.S1_at10/112+35495498..35495790hypothetical protein
LOC_Os02g57980Os.26581.1.S1_at11/112+35496214..35501173DEAD/DEAH box helicase family protein, expressed
LOC_Os02g57990Os.9687.1.S1_at11/112+35501294..35505007methionine adenosyltransferase regulatory beta subunit, putative, expressed
LOC_Os02g57990Os.56368.1.S1_at3/112+35501294..35505007methionine adenosyltransferase regulatory beta subunit, putative, expressed
LOC_Os02g58000OsAffx.24914.1.S1_at11/112+35507203..35507472hypothetical protein
LOC_Os02g58010Os.13484.1.S1_at11/112+35509890..35511189expressed protein
LOC_Os02g58010OsAffx.24915.1.S1_at10/112+35509890..35511189expressed protein
LOC_Os02g58020Os.10758.1.S1_a_at11/112+35511679..35517489ABC transporter family protein, expressed
LOC_Os02g58030Os.38001.1.A1_at11/112+35520748..35527178leucine-rich repeat protein, putative, expressed
LOC_Os02g58040OsAffx.24916.1.S1_at10/112+35528270..35530261F-box domain containing protein
LOC_Os02g58050OsAffx.24917.1.S1_at11/112+35534428..35537623hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24915.1.S1_at--149--9311NONE
TCCCGCCCTTCACAATTGCATATGA
NONE
OsAffx.24915.1.S1_at--215--3171Chr02:35509977..35510407 (25 bp)
AATTGCATATGACCAAATGAGTGTG
LOC_Os02g58010
OsAffx.24915.1.S1_at--49--691Chr02:35509969..35510399 (25 bp)
ATGACCAAATGAGTGTGGACGTTTC
LOC_Os02g58010
OsAffx.24915.1.S1_at--766--4371Chr02:35509965..35509985 (21 bp)
CCAAATGAGTGTGGACGTTTCTGAC
LOC_Os02g58010
OsAffx.24915.1.S1_at--7--3011Chr02:35509962..35509985 (24 bp)
AATGAGTGTGGACGTTTCTGACAAT
LOC_Os02g58010
OsAffx.24915.1.S1_at--830--1071Chr02:35509958..35509982 (25 bp)
AGTGTGGACGTTTCTGACAATGAGT
LOC_Os02g58010
OsAffx.24915.1.S1_at--938--8951Chr02:35509944..35509968 (25 bp)
TGACAATGAGTGCTTATCACTGAAT
LOC_Os02g58010
OsAffx.24915.1.S1_at--420--4891Chr02:35509933..35509957 (25 bp)
GCTTATCACTGAATGTTGATTCCCA
LOC_Os02g58010
OsAffx.24915.1.S1_at--773--371Chr02:35509929..35509953 (25 bp)
ATCACTGAATGTTGATTCCCAAGCA
LOC_Os02g58010
OsAffx.24915.1.S1_at--673--1971Chr02:35509926..35509950 (25 bp)
ACTGAATGTTGATTCCCAAGCAATT
LOC_Os02g58010
OsAffx.24915.1.S1_at--685--2991Chr02:35509922..35509946 (25 bp)
AATGTTGATTCCCAAGCAATTATTT
LOC_Os02g58010
Target Sequence 
TCCCGCCCTTCACAATTGCATATGACCAAATGAGTGTGGACGTTTCTGACAATGAGTGCTTATCACTGAATGTTGATTCC
CAAGCAATTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis