Browse Element(s) Details


OsAffx.24925.1.S1_x_at

Description tigr:9630.m05849
TID=OsAffx.24925.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to callose synthase 1 catalytic subunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5856011/11glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g430201/11CTP synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58490Os.7419.1.S1_a_at11/112+35755309..35762519PINHEAD protein, putative, expressed
LOC_Os02g58500Os.4603.1.S1_at11/112+35764745..35766255phospholipase A2, putative, expressed
LOC_Os02g58510Os.27193.1.S1_at11/112+35766329..35768918homoserine kinase family protein, expressed
LOC_Os02g58520Os.24128.1.A1_at11/112+35769161..35771397Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os02g58530OsAffx.3105.1.S1_at11/112+35773561..35775519major facilitator superfamily protein, expressed
LOC_Os02g58540OsAffx.24924.1.S1_at11/112+35777415..35778267Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g58550Os.47401.1.A1_s_at11/112+35778974..35781951chloroplast channel forming outer membrane protein, putative, expressed
LOC_Os02g58550Os.18407.1.S1_at11/112+35778974..35781951chloroplast channel forming outer membrane protein, putative, expressed
LOC_Os02g58560OsAffx.24925.1.S1_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560OsAffx.24925.1.S1_x_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.50372.1.S2_x_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.17864.1.S1_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.38768.1.A1_at10/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.50372.1.S1_at10/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.38768.1.A1_s_at10/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58570Os.19421.1.S1_at11/112+35798862..35800671PRLI-interacting factor A, putative, expressed
LOC_Os02g58580Os.38243.1.S1_at11/112+35801176..35806577Metal tolerance protein C2, putative, expressed
LOC_Os02g58580Os.8441.1.S1_s_at11/112+35801176..35806577Metal tolerance protein C2, putative, expressed
LOC_Os02g58580Os.8441.1.S1_at11/112+35801176..35806577Metal tolerance protein C2, putative, expressed
LOC_Os02g58590NANA2+35808178..35812308GNT-I family protein, expressed
LOC_Os02g58600Os.22510.1.A1_at1/112+35813605..35814421hypothetical protein
LOC_Os02g58610Os.54945.1.S1_at11/112+35815834..35817102Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os02g58620Os.27485.1.S1_at1/112+35817332..35823762MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006075biological_processbeta-1,3 glucan biosynthesis
GO:0009556biological_processmicrosporogenesis
GO:0009620biological_processresponse to fungi
GO:0009860biological_processpollen tube growth
GO:0009863biological_processsalicylic acid mediated signaling pathway
GO:0009870biological_processdefense response signaling pathway, resistance gene-dependent
GO:0009965biological_processleaf morphogenesis
GO:0010208biological_processpollen wall formation
GO:0000148cellular_component1,3-beta-glucan synthase complex
GO:0009504cellular_componentcell plate
GO:0003843molecular_function1,3-beta-glucan synthase activity
GO:0003883molecular_functionCTP synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24925.1.S1_x_at--378--2331Chr02:35797302..35797431 (25 bp)
AAAGAGTGTCCTGGTCTATTGCCTG
LOC_Os02g58560
OsAffx.24925.1.S1_x_at--594--3692Chr02:35797422..35797446 (25 bp)
CTATTGCCTGTCATGGGTTGTCATC
LOC_Os02g58560
OsAffx.24925.1.S1_x_at--861--7911Chr02:35797437..35797461 (25 bp)
GGTTGTCATCTTTGTAATTCTGCTT
LOC_Os02g58560
OsAffx.24925.1.S1_x_at--312--671Chr02:35797500..35797520 (21 bp)
ATGAAGTGTTTCATCGCGGTGCTCA
LOC_Os02g58560
OsAffx.24925.1.S1_x_at--739--6831Chr02:35797503..35797527 (25 bp)
GTTTCATCGCGGTGCTCATGAGCAA
LOC_Os02g58560
OsAffx.24925.1.S1_x_at--209--10011Chr02:35797865..35797889 (25 bp)
TAGCAATCCCTCATATGACAGTCCA
LOC_Os02g58560
OsAffx.24925.1.S1_x_at--935--8131Chr02:35797890..35797914 (25 bp)
GGACATCTTTGTTTGCATTCTTGCC
LOC_Os02g58560
OsAffx.24925.1.S1_x_at--801--6611Chr02:35798022..35798043 (22 bp)
GTTGGTTGCGCAAGCTATCAAGCCA
LOC_Os02g58560
OsAffx.24925.1.S1_x_at--559--2651Chr02:35798038..35798062 (25 bp)
AAGCCAGTAATTGTGCGCATCGGGT
LOC_Os02g58560
OsAffx.24925.1.S1_x_at--705--6851Chr02:35798154..35798178 (25 bp)
GTTTGTATCCGAGTTCCAGACCAGA
LOC_Os02g58560
OsAffx.24925.1.S1_x_at--1067--1371Chr02:35798171..35798195 (25 bp)
AGACCAGAATGCTCTTCAACCAGGC
LOC_Os02g58560
Target Sequence 
AAAGAGTGTCCTGGTCTATTGCCTGTCATGGGTTGTCATCTTTGTAATTCTGCTTGTGATGAAGTGTTTCATCGCGGTGC
TCATGAGCAACATTGTGGTTAGAACACAGGGGACCGTGTCAGTTGGGAGGCGGAAATTCAGCGCGGACTTCCAACTTGTG
TTCCGGTTGATTAAGGGGTTGATATTTATAACATTTATCTCCATCATTATAATCTTGATAGCAATCCCTCATATGACAGT
CCAGGACATCTTTGTTTGCATTCTTGCCTTCATGCCAACTGGCTGGGGTCTGCTGTTGGTTGCGCAAGCTATCAAGCCAG
TAATTGTGCGCATCGGGTTGTGGGGATCGATCAAGGCGCTTGCGAGGGGATATGAGATCATCATGGGGCTCCTGCTCTTC
ACCCCGATCGCGTTCCTCGCTTGGTTCCCGTTTGTATCCGAGTTCCAGACCAGAATGCTCTTCAACCAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24925.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis