Browse Element(s) Details


OsAffx.24927.2.S1_x_at

Description gb:NM_184475.1
DB_XREF= gi:34896039
TID=OsAffx.24927.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0669011/11hypothetical protein
LOC_Os02g587605/11hypothetical protein
LOC_Os09g272904/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06650OsAffx.21870.3.S1_x_at1/111+3131019..3132211hypothetical protein
LOC_Os01g06650OsAffx.21870.2.S1_x_at1/111+3131019..3132211hypothetical protein
LOC_Os01g06660Os.1445.1.S1_at11/111+3132906..3137019Pyruvate decarboxylase isozyme 1, putative, expressed
LOC_Os01g06670Os.32879.1.S1_at11/111+3140403..3143614Leucine Rich Repeat family protein, expressed
LOC_Os01g06670Os.32879.1.S2_at11/111+3140403..3143614Leucine Rich Repeat family protein, expressed
LOC_Os01g06680OsAffx.1685.1.S1_at11/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680OsAffx.22766.1.S1_at11/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680OsAffx.25437.1.S1_at2/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680OsAffx.15781.1.S1_at2/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680Os.8855.1.S1_at1/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06690OsAffx.24927.2.S1_x_at11/111+3153981..3155789hypothetical protein
LOC_Os01g06690OsAffx.24927.1.S1_x_at7/111+3153981..3155789hypothetical protein
LOC_Os01g06700OsAffx.30352.2.S1_at11/111+3158122..3164468retrotransposon protein, putative, unclassified
LOC_Os01g06710OsAffx.30352.3.S1_at11/111+3164802..3168215hypothetical protein
LOC_Os01g06710Os.18947.1.S1_at2/111+3164802..3168215hypothetical protein
LOC_Os01g06710Os.39421.1.S1_at2/111+3164802..3168215hypothetical protein
LOC_Os01g06710OsAffx.30352.1.S1_at1/111+3164802..3168215hypothetical protein
LOC_Os01g06710Os.27342.1.S2_at1/111+3164802..3168215hypothetical protein
LOC_Os01g06710OsAffx.20967.1.S1_x_at1/111+3164802..3168215hypothetical protein
LOC_Os01g06720OsAffx.23138.1.S1_at10/111+3173346..3176404Leucine Rich Repeat family protein
LOC_Os01g06730Os.24977.1.A1_at7/111+3178941..3182009Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24927.2.S1_x_at--1134--273Chr09:16591981..16592005 (25 bp)
ATAGAGTACATTGGTGCTGCCACCG
LOC_Os09g27290
OsAffx.24927.2.S1_x_at--243--4793Chr09:16591996..16592020 (25 bp)
GCTGCCACCGCTGCATGGGAAAATA
LOC_Os09g27290
OsAffx.24927.2.S1_x_at--317--8111Chr01:3155262..3155286 (25 bp)
GGACGCCCCACAGACTTGGAGAAGT
LOC_Os01g06690
OsAffx.24927.2.S1_x_at--807--6651Chr01:3155285..3155309 (25 bp)
GTTGATGTCTTACTTGGGAGCACTT
LOC_Os01g06690
OsAffx.24927.2.S1_x_at--331--8071Chr01:3155301..3155325 (25 bp)
GGAGCACTTGTCCAACGTCTTAAGG
LOC_Os01g06690
OsAffx.24927.2.S1_x_at--648--5992Chr02:35892308..35892332 (25 bp)
GAGAGCTCCCGGTAACCTTTGAAGG
LOC_Os02g58760
OsAffx.24927.2.S1_x_at--1115--6011Chr01:3155403..3155427 (25 bp)
GAGAGTGCATGTTCAGACGTGCTAC
LOC_Os01g06690
OsAffx.24927.2.S1_x_at--739--4331Chr01:3155453..3155477 (25 bp)
CCATGAAGACGTGGCTGCGGACCTT
LOC_Os01g06690
OsAffx.24927.2.S1_x_at--94--1672Chr02:35892570..35892594 (25 bp)
AGCCGCCAAGAACCTGCAAGTTTAT
LOC_Os02g58760
OsAffx.24927.2.S1_x_at--684--10412Chr09:16592379..16592403 (25 bp)
TTATGATAGTACCATCGACGGCGTC
LOC_Os09g27290
OsAffx.24927.2.S1_x_at--35--8473Chr09:16592498..16592522 (25 bp)
TGGCCGCCATTCTATCATATCGTAG
LOC_Os09g27290
Target Sequence 
ATAGAGTACATTGGTGCTGCCACCGCTGCATGGGAAAATAGTTACGAGATTGGACGCCCCACAGACTTGGAGAAGTTGAT
GTCTTACTTGGGAGCACTTGTCCAACGTCTTAAGGGAGAGCTCCCGGTAACCTTTGAAGGGAGAACTTTAGCTGCTCATG
AAGGCGAGGCGCGCTCTTCCTTAGCAAAGCTAGAGAGTGCATGTTCAGACGTGCTACCAGACCTTGACCTCCTCAAGAGT
GGCCATGAAGACGTGGCTGCGGACCTTCAGAAGTCCAAGCAAGCAGGGGCTACCTGGAAGAAAGAGGCGGAGGAACATGA
GCTGAAAGCCAAAGATGCGAGGGAGAAGGAGCACCAGTGTTTGGAATCAGAGGAGGCAGCCGCCAAGAACCTGCAAGTTT
ATGATAGTACCATCGACGGCGTCATGCAGCTGATAAAGCGTCGTGACGAGGCGAAGGTCTATTTGGGGCATCTTGCTGAA
GAGAGGAAACTCCTTGCAGTGGCCGCGCCGCCAGAGGTGGCCGCCATTCTATCATATCGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24927.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis