Browse Element(s) Details


OsAffx.24984.1.S1_at

Description tigr:9631.m00484
TID=OsAffx.24984.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0560011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05580NANA3+2772655..2773335hypothetical protein
LOC_Os03g05590Os.38983.1.S1_at11/113+2779401..2780011AP2 domain containing protein, expressed
LOC_Os03g05600OsAffx.24984.1.S1_at11/113+2781982..2782394hypothetical protein
LOC_Os03g05610Os.54757.1.S1_at11/113+2783252..2785052phosphate transporter HvPT5, putative, expressed
LOC_Os03g05610Os.57546.1.S1_x_at1/113+2783252..2785052phosphate transporter HvPT5, putative, expressed
LOC_Os03g05620Os.12092.2.S1_a_at11/113+2786689..2788650phosphate:H+ symporter family protein, expressed
LOC_Os03g05620Os.57546.1.S1_x_at4/113+2786689..2788650phosphate:H+ symporter family protein, expressed
LOC_Os03g05630Os.54405.1.S1_at2/113+2790889..2793111expressed protein
LOC_Os03g05640Os.5086.1.S1_at10/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05640Os.57546.1.S1_x_at2/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05640Os.46784.1.S1_x_at1/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05650Os.57503.1.A1_at7/113+2798108..2799229expressed protein
LOC_Os03g05660Os.49567.1.S1_at3/113+2802418..2807057Appr-1-p processing enzyme family protein, expressed
LOC_Os03g05660OsAffx.25937.1.S1_at1/113+2802418..2807057Appr-1-p processing enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24984.1.S1_at--774--3251Chr03:2782014..2782038 (25 bp)
CAACGCGATAGACCCTGTGCAGGAC
LOC_Os03g05600
OsAffx.24984.1.S1_at--36--8371Chr03:2782044..2782068 (25 bp)
GGCGGGTGCCGTTGATCCTATCGTC
LOC_Os03g05600
OsAffx.24984.1.S1_at--1046--4031Chr03:2782053..2782077 (25 bp)
CGTTGATCCTATCGTCGCTATTGAT
LOC_Os03g05600
OsAffx.24984.1.S1_at--458--571Chr03:2782058..2782082 (25 bp)
ATCCTATCGTCGCTATTGATCCCGT
LOC_Os03g05600
OsAffx.24984.1.S1_at--457--10211Chr03:2782071..2782095 (25 bp)
TATTGATCCCGTCTCCGTTGAGGCC
LOC_Os03g05600
OsAffx.24984.1.S1_at--1030--4151Chr03:2782095..2782119 (25 bp)
CGCCGCCATATATCATGCTGTCATT
LOC_Os03g05600
OsAffx.24984.1.S1_at--631--411Chr03:2782106..2782130 (25 bp)
ATCATGCTGTCATTATCGTGGACGC
LOC_Os03g05600
OsAffx.24984.1.S1_at--778--7131Chr03:2782114..2782138 (25 bp)
GTCATTATCGTGGACGCGGGCCAAA
LOC_Os03g05600
OsAffx.24984.1.S1_at--337--4672Chr03:2782129..2782299 (25 bp)
GCGGGCCAAACAAGATGCTGCCAAA
LOC_Os03g05600
OsAffx.24984.1.S1_at--288--7031Chr03:2782315..2782339 (25 bp)
GTACATGCTACCAAAATCTGAACTG
LOC_Os03g05600
OsAffx.24984.1.S1_at--281--471Chr03:2782330..2782354 (25 bp)
ATCTGAACTGCATCAAGAGTTTCTT
LOC_Os03g05600
Target Sequence 
CAACGCGATAGACCCTGTGCAGGACCAGCGGGCGGGTGCCGTTGATCCTATCGTCGCTATTGATCCCGTCTCCGTTGAGG
CCGCCGCCATATATCATGCTGTCATTATCGTGGACGCGGGCCAAACAAGATGCTGCCAAAATTTAGTAAAAAGGGGTACA
TGCTACCAAAATCTGAACTGCATCAAGAGTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24984.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis