Browse Element(s) Details


OsAffx.24989.1.S1_at

Description tigr:9631.m00540
TID=OsAffx.24989.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0617011/11Hsp20/alpha crystallin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06120Os.15302.1.S1_at11/113+3048080..3053158Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g06139Os.8900.1.S1_a_at11/113+3055038..3065100ABC transporter family protein, putative, expressed
LOC_Os03g06160Os.5723.1.S1_at11/113+3070969..3074757K+ channel tetramerisation domain containing protein, expressed
LOC_Os03g06170OsAffx.24989.1.S1_at11/113+3075141..3076069Hsp20/alpha crystallin family protein, expressed
LOC_Os03g06180Os.54129.2.S1_x_at11/113+3077076..3081216expressed protein
LOC_Os03g06190Os.23349.1.S1_x_at11/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06190Os.23349.2.S1_at7/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06190OsAffx.27445.1.S1_x_at1/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06200Os.4891.1.S1_at11/113+3089836..3091654Phosphoserine aminotransferase, chloroplast precursor, putative, expressed
LOC_Os03g06200Os.27173.1.A1_x_at1/113+3089836..3091654Phosphoserine aminotransferase, chloroplast precursor, putative, expressed
LOC_Os03g06210OsAffx.22651.3.A1_x_at10/113+3093643..3094827hypothetical protein
LOC_Os03g06210OsAffx.22651.3.A1_at10/113+3093643..3094827hypothetical protein
LOC_Os03g06210OsAffx.22651.1.S1_x_at6/113+3093643..3094827hypothetical protein
LOC_Os03g06220Os.21879.1.A1_at11/113+3095097..3099482DEAD/DEAH box helicase family protein, expressed
LOC_Os03g06230Os.52354.1.S1_at10/113+3098942..3102869expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24989.1.S1_at--608--10591Chr03:3075757..3075781 (25 bp)
TTCGTCGCATTCTGTTTTTCAACAC
LOC_Os03g06170
OsAffx.24989.1.S1_at--789--9591Chr03:3075739..3075763 (25 bp)
TCAACACCAACTTTTAGACCGAATA
LOC_Os03g06170
OsAffx.24989.1.S1_at--467--3171Chr03:3075712..3075736 (25 bp)
AATTGTTTTTTATTGCTCAGTTCAT
LOC_Os03g06170
OsAffx.24989.1.S1_at--645--6111Chr03:3075616..3075640 (25 bp)
GAGTGCAGATCGACAACCACGGGAA
LOC_Os03g06170
OsAffx.24989.1.S1_at--115--5611Chr03:3075605..3075629 (25 bp)
GACAACCACGGGAAGCTGCGGATAA
LOC_Os03g06170
OsAffx.24989.1.S1_at--1153--1651Chr03:3075548..3075572 (25 bp)
AGCCGCTTCCACAAGGATTTCCAGG
LOC_Os03g06170
OsAffx.24989.1.S1_at--23--2911Chr03:3075536..3075560 (25 bp)
AAGGATTTCCAGGTCCCCGATGACT
LOC_Os03g06170
OsAffx.24989.1.S1_at--182--611Chr03:3075452..3075476 (25 bp)
ATGCCCAAGCTGTCGCCGGCGGAAG
LOC_Os03g06170
OsAffx.24989.1.S1_at--1059--2611Chr03:3075366..3075390 (25 bp)
AACCGCTGCACCAGCAGATCAAGAG
LOC_Os03g06170
OsAffx.24989.1.S1_at--960--1451Chr03:3075324..3075348 (25 bp)
AGAAGATGACGATGGCGCGGCCAAC
LOC_Os03g06170
OsAffx.24989.1.S1_at--91--2131Chr03:3075184..3075208 (25 bp)
ACAGGCTGATGATGGATCCGTCGGC
LOC_Os03g06170
Target Sequence 
TTCGTCGCATTCTGTTTTTCAACACCAACTTTTAGACCGAATACAAATTGTTTTTTATTGCTCAGTTCATGCAATGCAAG
GGTTCAAGAAGGAGCAGCTGAGAGTGCAGATCGACAACCACGGGAAGCTGCGGATAAGCGGCGAGCGGCAGGTCTCCGGC
AACCGGTGGAGCCGCTTCCACAAGGATTTCCAGGTCCCCGATGACTGCAACGCCGGCGACGTCCGCGCCAGGTTCGACTC
CAGGGACCGCGTCCTCCACATCACCATGCCCAAGCTGTCGCCGGCGGAAGAGGAGCCCAAGGCCGCCGCCGCCGCCGCAC
CCGCCGATCATGGCGCCGCGCAGGCGCAGCAAACCGCTGCACCAGCAGATCAAGAGAAGGAGGACAAGGAAGAAGAAGAT
GACGATGGCGCGGCCAACGACGGGGCGGCGGCGGGTGGCACCGCCTTGGTGACCGGCCGGAGGAAGACGCCGTGGAGGGT
GGTCCTCGCCGTCGTGCTGGCGTTGGTGGCCGCCGCCGGCTTCTACGCCAAGTACAGGCTGATGATGGATCCGTCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24989.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis