Browse Element(s) Details


OsAffx.25007.2.S1_at

Description tigr:9631.m00677
TID=OsAffx.25007.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0746011/11hypothetical protein
LOC_Os09g364109/11retrotransposon protein, putative, unclassified
LOC_Os05g404608/11retrotransposon protein, putative, unclassified
LOC_Os04g292707/11retrotransposon protein, putative, unclassified
LOC_Os01g725007/11retrotransposon protein, putative, unclassified
LOC_Os08g298805/11retrotransposon protein, putative, unclassified
LOC_Os01g419603/11retrotransposon protein, putative, unclassified
LOC_Os02g479901/11retrotransposon protein, putative, LINE subclass
LOC_Os05g391301/11retrotransposon protein, putative, unclassified
LOC_Os10g326301/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07420Os.6131.1.S1_at11/113+3742938..3746341predicted 3-dehydroquinate synthase family protein, expressed
LOC_Os03g07430Os.9257.1.S1_at11/113+3746799..3750660serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g07440NANA3+3755892..3756656Vip1 protein, putative, expressed
LOC_Os03g07450OsAffx.12765.1.S1_x_at11/113+3763394..3766044DNA-binding protein, putative, expressed
LOC_Os03g07450OsAffx.18415.1.S1_x_at4/113+3763394..3766044DNA-binding protein, putative, expressed
LOC_Os03g07460OsAffx.25007.2.S1_at11/113+3766797..3767501hypothetical protein
LOC_Os03g07460OsAffx.25007.2.S1_s_at11/113+3766797..3767501hypothetical protein
LOC_Os03g07460OsAffx.25007.1.S1_at6/113+3766797..3767501hypothetical protein
LOC_Os03g07470OsAffx.3164.1.S1_at11/113+3773693..3774661Glutaredoxin family protein
LOC_Os03g07480Os.4704.1.S1_at11/113+3776807..3783243sucrose transporter, putative, expressed
LOC_Os03g07490NANA3+3786704..3786910hypothetical protein
LOC_Os03g07500Os.45967.1.A1_at1/113+3789494..3789889hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25007.2.S1_at--978--8136Chr09:21010151..21010175 (25 bp)
GGACACCAGCCGCTGAAATACCTAG
LOC_Os09g36410
OsAffx.25007.2.S1_at--141--5658Chr09:21010152..21010176 (25 bp)
GACACCAGCCGCTGAAATACCTAGC
LOC_Os09g36410
OsAffx.25007.2.S1_at--228--6019Chr09:21010366..21010523 (25 bp)
GAGATGGACAAATACCGGATATGGA
LOC_Os09g36410
OsAffx.25007.2.S1_at--597--3677Chr09:21010564..21010588 (25 bp)
CTTTTGCCAACTCTGCTACAGGAAC
LOC_Os09g36410
OsAffx.25007.2.S1_at--187--10397Chr09:21010565..21010589 (25 bp)
TTTTGCCAACTCTGCTACAGGAACT
LOC_Os09g36410
OsAffx.25007.2.S1_at--703--10277Chr09:21010566..21010590 (25 bp)
TTTGCCAACTCTGCTACAGGAACTT
LOC_Os09g36410
OsAffx.25007.2.S1_at--1081--10677Chr09:21010567..21010590 (24 bp)
TTGCCAACTCTGCTACAGGAACTTG
LOC_Os09g36410
OsAffx.25007.2.S1_at--495--3731Chr03:3766846..3766870 (25 bp)
CTACAGGAACTTGGAAACGGCGCAA
LOC_Os03g07460
OsAffx.25007.2.S1_at--1075--8514Chr09:21010595..21010614 (20 bp)
TGGAAACGGCGCAACATTTATTCAA
LOC_Os09g36410
OsAffx.25007.2.S1_at--991--8152Chr09:21010595..21010615 (21 bp)
GGAAACGGCGCAACATTTATTCAAG
LOC_Os09g36410
OsAffx.25007.2.S1_at--454--5551Chr03:3766833..3766857 (25 bp)
GAAACGGCGCAACATTTATTCAAGA
LOC_Os03g07460
Target Sequence 
GGACACCAGCCGCTGAAATACCTAGCGCCAGCGCTTTTCAACCACTCTAAAGGAAAGCAACGCTTAGTTCAGGATGCGTT
AACCAATGACAAATGGATTGAGGATATTAGGCATGAGCTGTCCATGCCACTGATCCGAGAATTCTTCGCAGTGTTCCGCC
TTATCTGGGATAATGAGACAAACCTGGAGGAAGGAGTTGAAGACACCATCACCTGGAGATGGACAAATACCGGATATGGA
CATCCGACCGCTTGCAACTCCGACAATGGCCCAATAACTACTTTTGCCAACTCTGCTACAGGAACTTGGAAACGGCGCAA
CATTTATTCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25007.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis