Browse Element(s) Details


OsAffx.25007.2.S1_s_at

Description tigr:9631.m00677
TID=OsAffx.25007.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0746011/11hypothetical protein
LOC_Os10g3263011/11retrotransposon protein, putative, unclassified
LOC_Os05g4046010/11retrotransposon protein, putative, unclassified
LOC_Os09g3641010/11retrotransposon protein, putative, unclassified
LOC_Os01g419609/11retrotransposon protein, putative, unclassified
LOC_Os10g282509/11retrotransposon protein, putative, LINE subclass
LOC_Os04g292708/11retrotransposon protein, putative, unclassified
LOC_Os01g725008/11retrotransposon protein, putative, unclassified
LOC_Os08g298805/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07420Os.6131.1.S1_at11/113+3742938..3746341predicted 3-dehydroquinate synthase family protein, expressed
LOC_Os03g07430Os.9257.1.S1_at11/113+3746799..3750660serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g07440NANA3+3755892..3756656Vip1 protein, putative, expressed
LOC_Os03g07450OsAffx.12765.1.S1_x_at11/113+3763394..3766044DNA-binding protein, putative, expressed
LOC_Os03g07450OsAffx.18415.1.S1_x_at4/113+3763394..3766044DNA-binding protein, putative, expressed
LOC_Os03g07460OsAffx.25007.2.S1_at11/113+3766797..3767501hypothetical protein
LOC_Os03g07460OsAffx.25007.2.S1_s_at11/113+3766797..3767501hypothetical protein
LOC_Os03g07460OsAffx.25007.1.S1_at6/113+3766797..3767501hypothetical protein
LOC_Os03g07470OsAffx.3164.1.S1_at11/113+3773693..3774661Glutaredoxin family protein
LOC_Os03g07480Os.4704.1.S1_at11/113+3776807..3783243sucrose transporter, putative, expressed
LOC_Os03g07490NANA3+3786704..3786910hypothetical protein
LOC_Os03g07500Os.45967.1.A1_at1/113+3789494..3789889hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25007.2.S1_s_at--410--98Chr09:21009976..21010000 (25 bp)
ATTCGCGAGAGCTTTGAGACTCCGT
LOC_Os09g36410
OsAffx.25007.2.S1_s_at--1086--8899Chr09:21009990..21010014 (25 bp)
TGAGACTCCGTTGGCTATGGTTTGA
LOC_Os09g36410
OsAffx.25007.2.S1_s_at--345--10910Chr09:21010014..21010038 (25 bp)
AGTGGGAGTGCCCTGACAAACCTTG
LOC_Os09g36410
OsAffx.25007.2.S1_s_at--1124--2598Chr09:21010190..21010214 (25 bp)
AACCACTCTAAAGGAAAGCAACGCT
LOC_Os09g36410
OsAffx.25007.2.S1_s_at--6--6177Chr09:21010250..21010274 (25 bp)
GAGGATATTAGGCATGAGCTGTCCA
LOC_Os09g36410
OsAffx.25007.2.S1_s_at--1111--8918Chr09:21010264..21010288 (25 bp)
TGAGCTGTCCATGCCACTGATCCGA
LOC_Os09g36410
OsAffx.25007.2.S1_s_at--420--3539Chr09:21010273..21010297 (25 bp)
CATGCCACTGATCCGAGAATTCTTC
LOC_Os09g36410
OsAffx.25007.2.S1_s_at--674--1116Chr01:42368577..42368601 (25 bp)
AGTGTTCCGCCTTATCTGGGATAAT
LOC_Os01g72500
OsAffx.25007.2.S1_s_at--569--6196Chr09:21010337..21010361 (25 bp)
GAGGAAGGAGTTGAAGACACCATCA
LOC_Os09g36410
OsAffx.25007.2.S1_s_at--485--7958Chr09:21010515..21010539 (25 bp)
GGATATGGACATCCGACCGCTTGCA
LOC_Os09g36410
OsAffx.25007.2.S1_s_at--1005--9017Chr09:21010536..21010560 (25 bp)
TGCAACTCCGACAATGGCCCAATAA
LOC_Os09g36410
Target Sequence 
ATTCGCGAGAGCTTTGAGACTCCGTTGGCTATGGTTTGAGTGGGAGTGCCCTGACAAACCTTGGGTTGGGACAACACCCC
ACTACGATGAGTTAGATGAGCAAATCTTCGTGGCCGCAACAAAGGTAACAATCGGTAATGGGCAGAAGGCAAAATTTTGG
ACATCCAACTGGATTGGACACCAGCCGCTGAAATACCTAGCGCCAGCGCTTTTCAACCACTCTAAAGGAAAGCAACGCTT
AGTTCAGGATGCGTTAACCAATGACAAATGGATTGAGGATATTAGGCATGAGCTGTCCATGCCACTGATCCGAGAATTCT
TCGCAGTGTTCCGCCTTATCTGGGATAATGAGACAAACCTGGAGGAAGGAGTTGAAGACACCATCACCTGGAGATGGACA
AATACCGGATATGGACATCCGACCGCTTGCAACTCCGACAATGGCCCAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25007.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis