Browse Element(s) Details


OsAffx.25008.1.S1_s_at

Description tigr:9631.m00683
TID=OsAffx.25008.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BT004686 At1g26948
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0751011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07470OsAffx.3164.1.S1_at11/113+3773693..3774661Glutaredoxin family protein
LOC_Os03g07480Os.4704.1.S1_at11/113+3776807..3783243sucrose transporter, putative, expressed
LOC_Os03g07490NANA3+3786704..3786910hypothetical protein
LOC_Os03g07500Os.45967.1.A1_at1/113+3789494..3789889hypothetical protein
LOC_Os03g07510OsAffx.25008.1.S1_s_at11/113+3793714..3795941hypothetical protein
LOC_Os03g07510Os.52845.1.S1_at6/113+3793714..3795941hypothetical protein
LOC_Os03g07510OsAffx.1396.1.S1_x_at1/113+3793714..3795941hypothetical protein
LOC_Os03g07530Os.15812.1.S1_at11/113+3813079..3815846kelch repeat-containing F-box family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25008.1.S1_s_at--148--7291Chr03:3793842..3793866 (25 bp)
GTGCCATCTTCGAGGGTTCTGCAGG
LOC_Os03g07510
OsAffx.25008.1.S1_s_at--549--6131Chr03:3793831..3793855 (25 bp)
GAGGGTTCTGCAGGAGACTTGCAAC
LOC_Os03g07510
OsAffx.25008.1.S1_s_at--946--7891Chr03:3793828..3793852 (25 bp)
GGTTCTGCAGGAGACTTGCAACTAC
LOC_Os03g07510
OsAffx.25008.1.S1_s_at--905--9471Chr03:3793825..3793849 (25 bp)
TCTGCAGGAGACTTGCAACTACATC
LOC_Os03g07510
OsAffx.25008.1.S1_s_at--391--5991Chr03:3793818..3793842 (25 bp)
GAGACTTGCAACTACATCAGGAGCT
LOC_Os03g07510
OsAffx.25008.1.S1_s_at--368--5691Chr03:3793816..3793840 (25 bp)
GACTTGCAACTACATCAGGAGCTTG
LOC_Os03g07510
OsAffx.25008.1.S1_s_at--157--3271Chr03:3793810..3793834 (25 bp)
CAACTACATCAGGAGCTTGCATCAG
LOC_Os03g07510
OsAffx.25008.1.S1_s_at--1092--2011Chr03:3793808..3793832 (25 bp)
ACTACATCAGGAGCTTGCATCAGGA
LOC_Os03g07510
OsAffx.25008.1.S1_s_at--615--9131Chr03:3793751..3793775 (25 bp)
TGCTGGCCACGTCCGACATGAGCAG
LOC_Os03g07510
OsAffx.25008.1.S1_s_at--690--8451Chr03:3793748..3793772 (25 bp)
TGGCCACGTCCGACATGAGCAGCGC
LOC_Os03g07510
OsAffx.25008.1.S1_s_at--299--3351Chr03:3793744..3793768 (25 bp)
CACGTCCGACATGAGCAGCGCGCAG
LOC_Os03g07510
Target Sequence 
GTGCCATCTTCGAGGGTTCTGCAGGAGACTTGCAACTACATCAGGAGCTTGCATCAGGAGGTCGACGACCTGAGCGAGAG
GCTGTCGGAGCTGCTGGCCACGTCCGACATGAGCAGCGCGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25008.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis