Browse Element(s) Details


OsAffx.25055.1.S1_s_at

Description tigr:9631.m01053
TID=OsAffx.25055.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to snap25 homologous protein snap29 (atsnap29) (synaptosomal-associated protein snap25-like 2). (mouse-ear cress)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1138011/11SNARE domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11340Os.12674.1.S1_s_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11340Os.50482.1.S1_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11350OsAffx.2198.4.S1_at11/113+5828014..5829498Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os03g11360Os.16437.1.S1_at11/113+5831689..5836578Leucine Rich Repeat family protein, expressed
LOC_Os03g11370Os.7036.1.S1_at11/113+5837342..5839072B3 DNA binding domain containing protein, expressed
LOC_Os03g11380OsAffx.25055.1.S1_s_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11380OsAffx.25055.1.S1_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11380Os.51936.1.S1_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11390OsAffx.25056.1.S1_at10/113+5843172..5843815hypothetical protein
LOC_Os03g11400OsAffx.3200.1.S1_s_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11400Os.51997.1.S1_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11400OsAffx.3200.1.S1_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11410Os.10891.1.S1_at2/113+5849271..5853928Mitochondrial processing peptidase beta subunit, mitochondrial precursor, putative, expressed
LOC_Os03g11420Os.15799.1.S1_at11/113+5855359..5862419Glycosyl hydrolase family 1 protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000911biological_processcytokinesis by cell plate formation
GO:0006944biological_processmembrane fusion
GO:0009612biological_processresponse to mechanical stimulus
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0016192biological_processvesicle-mediated transport
GO:0000299cellular_componentintegral to membrane of membrane fraction
GO:0005886cellular_componentplasma membrane
GO:0009504cellular_componentcell plate
GO:0005484molecular_functionSNAP receptor activity
GO:0005486molecular_functiont-SNARE activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25055.1.S1_s_at--969--2271Chr03:5841258..5841282 (25 bp)
AAATCCCTTCGATTCTGACTCTGAT
LOC_Os03g11380
OsAffx.25055.1.S1_s_at--1139--8811Chr03:5841279..5841303 (25 bp)
TGATTCTGAAGTGCCCTCAAGACCG
LOC_Os03g11380
OsAffx.25055.1.S1_s_at--1152--8971Chr03:5841285..5841309 (25 bp)
TGAAGTGCCCTCAAGACCGTCAAGG
LOC_Os03g11380
OsAffx.25055.1.S1_s_at--77--7091Chr03:5841303..5841327 (25 bp)
GTCAAGGGCACAATCTGTCCCAGTG
LOC_Os03g11380
OsAffx.25055.1.S1_s_at--982--3051Chr03:5841314..5841338 (25 bp)
AATCTGTCCCAGTGCGACGCACAGA
LOC_Os03g11380
OsAffx.25055.1.S1_s_at--959--5791Chr03:5841329..5841353 (25 bp)
GACGCACAGATCAATCTATACAAGA
LOC_Os03g11380
OsAffx.25055.1.S1_s_at--1154--4711Chr03:5841354..5841378 (25 bp)
GCTGGAGGACTATGCTGTTGATAAA
LOC_Os03g11380
OsAffx.25055.1.S1_s_at--93--9851Chr03:5841401..5841425 (25 bp)
TAAATGATTGTGTCAGAGCCGCTGA
LOC_Os03g11380
OsAffx.25055.1.S1_s_at--820--8731Chr03:5841411..5841435 (25 bp)
TGTCAGAGCCGCTGAAGCAATCAGA
LOC_Os03g11380
OsAffx.25055.1.S1_s_at--322--2411Chr03:5841449..5841473 (25 bp)
AAACACTGGTTACTTTGCATCGTCA
LOC_Os03g11380
OsAffx.25055.1.S1_s_at--1097--7351Chr03:5841476..5841500 (25 bp)
GTGAACAGATCACCCGAACTCATCG
LOC_Os03g11380
Target Sequence 
AAATCCCTTCGATTCTGACTCTGATTCTGAAGTGCCCTCAAGACCGTCAAGGGCACAATCTGTCCCAGTGCGACGCACAG
ATCAATCTATACAAGAGCTGGAGGACTATGCTGTTGATAAAGTAGAAGAAACATCACGCAAAGTAAATGATTGTGTCAGA
GCCGCTGAAGCAATCAGAGAAGATGCTACAAAAACACTGGTTACTTTGCATCGTCAAGGTGAACAGATCACCCGAACTCA
TCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25055.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis