Browse Element(s) Details


OsAffx.25066.1.S1_at

Description tigr:9631.m01134
TID=OsAffx.25066.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1213011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12090OsAffx.3204.1.S1_at10/113+6321465..6331026expressed protein
LOC_Os03g12100Os.54774.1.S1_x_at2/113+6331483..6332134retrotransposon, putative, centromere-specific, expressed
LOC_Os03g12100Os.54774.1.S1_at2/113+6331483..6332134retrotransposon, putative, centromere-specific, expressed
LOC_Os03g12110Os.37866.1.S1_at11/113+6333974..6336920Homocysteine S-methyltransferase 1, putative, expressed
LOC_Os03g12120Os.49206.1.S1_at11/113+6337210..6344710No apical meristem protein, expressed
LOC_Os03g12130OsAffx.25066.1.S1_at11/113+6347606..6348043hypothetical protein
LOC_Os03g12140Os.49195.1.S1_at11/113+6348567..6352819Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os03g12140Os.55846.1.S1_at1/113+6348567..6352819Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os03g12150Os.15087.1.S1_at11/113+6356529..6359358D-mannose binding lectin family protein, expressed
LOC_Os03g12160Os.16151.1.S1_at11/113+6359518..6367753Leucine Rich Repeat family protein, expressed
LOC_Os03g12160Os.52160.1.S1_at1/113+6359518..6367753Leucine Rich Repeat family protein, expressed
LOC_Os03g12170OsAffx.3205.1.S1_at10/113+6369228..6370796hypothetical protein
LOC_Os03g12180Os.34632.1.S1_at11/113+6371926..6374593MA3 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25066.1.S1_at--436--7371Chr03:6347947..6347971 (25 bp)
GTGACGTGGCGCAGCAACGGTCAAA
LOC_Os03g12130
OsAffx.25066.1.S1_at--219--1451Chr03:6347935..6347959 (25 bp)
AGCAACGGTCAAATTTCGCGGGCAC
LOC_Os03g12130
OsAffx.25066.1.S1_at--909--191Chr03:6347923..6347947 (25 bp)
ATTTCGCGGGCACCACGACCAGAGG
LOC_Os03g12130
OsAffx.25066.1.S1_at--542--8391Chr03:6347786..6347810 (25 bp)
GGCGCTCGTGGCAAAAACTGGGCAC
LOC_Os03g12130
OsAffx.25066.1.S1_at--650--8251Chr03:6347746..6347770 (25 bp)
GGCACGATGGCTTCGCGCGGCTTTC
LOC_Os03g12130
OsAffx.25066.1.S1_at--434--8271Chr03:6347728..6347752 (25 bp)
GGCTTTCGGCATCAGCCCCAACGGT
LOC_Os03g12130
OsAffx.25066.1.S1_at--1072--2571Chr03:6347709..6347733 (25 bp)
AACGGTCGTCTTCGCAGGCCGGCCT
LOC_Os03g12130
OsAffx.25066.1.S1_at--877--8351Chr03:6347683..6347707 (25 bp)
GGCGAGTACAAACGACTACTGGGAT
LOC_Os03g12130
OsAffx.25066.1.S1_at--369--9931Chr03:6347667..6347691 (25 bp)
TACTGGGATGGGATGCAGCGCTTTT
LOC_Os03g12130
OsAffx.25066.1.S1_at--241--10371Chr03:6347644..6347668 (25 bp)
TTTTTTGCTCTGCTTTCTGCCTGGG
LOC_Os03g12130
OsAffx.25066.1.S1_at--388--9491Chr03:6347636..6347660 (25 bp)
TCTGCTTTCTGCCTGGGCGACAGCA
LOC_Os03g12130
Target Sequence 
GTGACGTGGCGCAGCAACGGTCAAATTTCGCGGGCACCACGACCAGAGGCGACCGGCGGAAGCAGCGGCGAGCAGGCGAG
AGAATGGTTTGGTCGTGTTGTGGAGAGGAGAGTAGGGCGTGGCTCGGGGTGGATTGGGTGTGGTGCGCCGTGCGCGGGCG
CGGCGCTCGTGGCAAAAACTGGGCACGCCGCCCGCACGCACGGCACGATGGCTTCGCGCGGCTTTCGGCATCAGCCCCAA
CGGTCGTCTTCGCAGGCCGGCCTCGGCGAGTACAAACGACTACTGGGATGGGATGCAGCGCTTTTTTTTGCTCTGCTTTC
TGCCTGGGCGACAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25066.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis