Browse Element(s) Details


OsAffx.25091.1.S1_at

Description tigr:9631.m01453
TID=OsAffx.25091.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1509011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15050Os.12699.1.S1_at11/113+8197917..8203180Phosphoenolpyruvate carboxykinase, putative, expressed
LOC_Os03g15060NANA3+8206005..8208829hypothetical protein
LOC_Os03g15070OsAffx.3247.1.S1_at10/113+8216807..8219738hypothetical protein
LOC_Os03g15080Os.49583.1.S1_at11/113+8220585..8221555expressed protein
LOC_Os03g15090OsAffx.25091.1.S1_at11/113+8226667..8227302hypothetical protein
LOC_Os03g15100NANA3+8227607..8228455hypothetical protein
LOC_Os03g15110Os.27141.1.S1_at11/113+8230197..8232456expressed protein
LOC_Os03g15110Os.57365.1.S1_at10/113+8230197..8232456expressed protein
LOC_Os03g15110OsAffx.28452.1.S1_x_at7/113+8230197..8232456expressed protein
LOC_Os03g15120Os.33841.1.A1_at10/113+8234542..8239849Imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed
LOC_Os03g15120OsAffx.13488.1.S1_at2/113+8234542..8239849Imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed
LOC_Os03g15130OsAffx.25093.1.S1_at11/113+8244399..8244707hypothetical protein
LOC_Os03g15140OsAffx.13716.1.S1_at1/113+8247884..8252934retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25091.1.S1_at--524--1871Chr03:8226710..8226734 (25 bp)
ACGTCCGCATCGAGCGTCCGAAGTA
LOC_Os03g15090
OsAffx.25091.1.S1_at--512--7011Chr03:8226725..8226749 (25 bp)
GTCCGAAGTACGAGCGCCCGATCTA
LOC_Os03g15090
OsAffx.25091.1.S1_at--76--6971Chr03:8226732..8226756 (25 bp)
GTACGAGCGCCCGATCTACGAAGGC
LOC_Os03g15090
OsAffx.25091.1.S1_at--235--3691Chr03:8226747..8226771 (25 bp)
CTACGAAGGCTCTGAAATCCGTGTT
LOC_Os03g15090
OsAffx.25091.1.S1_at--84--2271Chr03:8226761..8226785 (25 bp)
AAATCCGTGTTTCTAGCGACGTCTG
LOC_Os03g15090
OsAffx.25091.1.S1_at--720--1771Chr03:8226827..8226851 (25 bp)
ACCTGGGATGGTGCAGGCTTCCCGA
LOC_Os03g15090
OsAffx.25091.1.S1_at--620--1811Chr03:8226863..8226887 (25 bp)
ACCCTCTCCGCGTAGAAGGCTGGAG
LOC_Os03g15090
OsAffx.25091.1.S1_at--267--2951Chr03:8226878..8226902 (25 bp)
AAGGCTGGAGCTTCGCCTTCGAGCT
LOC_Os03g15090
OsAffx.25091.1.S1_at--843--9371Chr03:8226896..8226920 (25 bp)
TCGAGCTCCCGTTGCAGCGGGAGCA
LOC_Os03g15090
OsAffx.25091.1.S1_at--62--7411Chr03:8226997..8227021 (25 bp)
GTGTTCCACAGGGAGGACCCGCAGA
LOC_Os03g15090
OsAffx.25091.1.S1_at--527--7911Chr03:8227244..8227268 (25 bp)
GGTTGGCCGTGCACATGTCATTGGA
LOC_Os03g15090
Target Sequence 
ACGTCCGCATCGAGCGTCCGAAGTACGAGCGCCCGATCTACGAAGGCTCTGAAATCCGTGTTTCTAGCGACGTCTGGCCG
TCGCGCTGCGTGCTGCACGCGTACGTCGGCGGCGAGCACCTGGGATGGTGCAGGCTTCCCGAGGGCCGCGACCACCCTCT
CCGCGTAGAAGGCTGGAGCTTCGCCTTCGAGCTCCCGTTGCAGCGGGAGCACTGGGGGCGCCTGTCCCTGGACCTCGAGG
TGGAGCGCCGCGACGTCTACTACGACGAGGACGACGGCGTGGTCAGGGTGTTCCACAGGGAGGACCCGCAGACGTCCAGC
CGGACCGCGGTGATCGGCAGGGCGCGGGTGGCGCTGGTCGACGCGCTGCTGCGCGACGGCGACGAGGACGAGGACGAGGA
CCGCGGGAGGAAGAGGAGGGAGAAGGACGGCCTGCCGGCCCTGGTCAAGGGGACCCGGGAGTTCGGTGAATGGGTGAAGC
TGCAGGGCTGGAGGTTCCCGGCGCGGGGGCCGCCGGCCAACGTCGTGCGCGGCCGGTTGGCCGTGCACATGTCATTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25091.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis