Browse Element(s) Details


OsAffx.25142.1.S1_at

Description tigr:9631.m01910
TID=OsAffx.25142.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=WD-40 repeat protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1934011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19280Os.22334.1.S1_s_at11/113+10822070..10826490Argininosuccinate lyase, putative, expressed
LOC_Os03g19280Os.20100.1.S1_s_at11/113+10822070..10826490Argininosuccinate lyase, putative, expressed
LOC_Os03g19290Os.11491.1.S1_at11/113+10827369..10828820mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os03g19300Os.10098.1.S1_at11/113+10829649..10832773peptide chain release factor 2 family protein, expressed
LOC_Os03g19310Os.49103.1.S1_at11/113+10832847..10834573Glycosyltransferase 5, putative, expressed
LOC_Os03g19320OsAffx.3274.1.S1_at11/113+10839919..10841386hypothetical protein
LOC_Os03g19330OsAffx.12935.1.S1_at11/113+10843526..10844872Glycosyltransferase 3, putative
LOC_Os03g19340OsAffx.25142.1.S1_at11/113+10845671..10861878expressed protein
LOC_Os03g19340OsAffx.11208.1.S1_at1/113+10845671..10861878expressed protein
LOC_Os03g19350Os.57424.1.S1_at11/113+10866549..10877809ATP-dependent protease La family protein, expressed
LOC_Os03g19350Os.35212.1.S1_x_at1/113+10866549..10877809ATP-dependent protease La family protein, expressed
LOC_Os03g19360OsAffx.32248.1.A1_at8/113+10880636..10882389hypothetical protein
LOC_Os03g19360OsAffx.32260.1.A1_at5/113+10880636..10882389hypothetical protein
LOC_Os03g19370Os.56365.1.S1_at11/113+10884435..10885840bZIP transcription factor family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25142.1.S1_at--1094--911Chr03:10847141..10847165 (25 bp)
AGGCTTCTATTGATCGGAACTGGAC
LOC_Os03g19340
OsAffx.25142.1.S1_at--719--3071Chr03:10847027..10847051 (25 bp)
AATCACTTGATTTTCCTGAGAGTCC
LOC_Os03g19340
OsAffx.25142.1.S1_at--892--5271Chr03:10846975..10846999 (25 bp)
GAATGATGGTTCTGATCACCCACAT
LOC_Os03g19340
OsAffx.25142.1.S1_at--6--311Chr03:10846952..10846976 (25 bp)
ATAGCCCCTGGGAACTCCATGATAC
LOC_Os03g19340
OsAffx.25142.1.S1_at--31--6491Chr03:10846932..10846956 (25 bp)
GATACTGGTAATCTGTGGGTCCCAT
LOC_Os03g19340
OsAffx.25142.1.S1_at--50--7711Chr03:10846916..10846940 (25 bp)
GGGTCCCATGGAAACATCCACACAT
LOC_Os03g19340
OsAffx.25142.1.S1_at--291--411Chr03:10846740..10846762 (23 bp)
ATCAGGATCGCTATGGCGTTCTGAA
LOC_Os03g19340
OsAffx.25142.1.S1_at--725--10651Chr03:10845866..10845890 (25 bp)
TTCCTGTCCAGTTTTCCATTGAGGT
LOC_Os03g19340
OsAffx.25142.1.S1_at--479--5471Chr03:10845809..10845833 (25 bp)
GAACTCTGGAAGCTATTCGACATGA
LOC_Os03g19340
OsAffx.25142.1.S1_at--493--9351Chr03:10845793..10845817 (25 bp)
TCGACATGATGCGACTGTGATGCTT
LOC_Os03g19340
OsAffx.25142.1.S1_at--697--5131Chr03:10845768..10845792 (25 bp)
GCAAATGCCCAGTCTTATTTCTCAA
LOC_Os03g19340
Target Sequence 
AGGCTTCTATTGATCGGAACTGGACTAACAGAGATAAGTGCAAAGTTTGGTGGAGGAATGAGTTAGAGGAAGGAGGAAGT
TGGTGGGAAGGAAGGGTATCAGCCGTAAAACCTAAATCACTTGATTTTCCTGAGAGTCCATGGGAGAAATATGTTATCCA
GTATAAGAATGATGGTTCTGATCACCCACATAGCCCCTGGGAACTCCATGATACTGGTAATCTGTGGGTCCCATGGAAAC
ATCCACACATTGATCTTGGTATAAAGGACAAATTGCTATCAGAGTTGGACAACTTACTCGAATTGTCTCACAGAAATCAG
GATCGCTATGGCGTTCTGAAGTTGAACAGTGTTGCAGAGAAATCAGATTTCATTAACAGGTTTCCTGTCCAGTTTTCCAT
TGAGGTGATTAGGATAAGGCTTGAGAACAATTACTACAGAACTCTGGAAGCTATTCGACATGATGCGACTGTGATGCTTG
CAAATGCCCAGTCTTATTTCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25142.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis