Browse Element(s) Details


OsAffx.25184.1.S1_at

Description tigr:9631.m02167
TID=OsAffx.25184.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=phospholipid-translocating P-type ATPase, flippase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2168011/11phospholipid-translocating P-type ATPase, flippase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21630OsAffx.12974.1.S1_x_at11/113+12326392..12331918expressed protein
LOC_Os03g21630Os.27146.1.A1_at11/113+12326392..12331918expressed protein
LOC_Os03g21640Os.50249.2.S1_at11/113+12333699..12337372expressed protein
LOC_Os03g21640Os.50249.1.S1_x_at11/113+12333699..12337372expressed protein
LOC_Os03g21650OsAffx.12975.1.S1_at11/113+12338091..12338555expressed protein
LOC_Os03g21660OsAffx.26070.1.S1_at11/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21660OsAffx.26070.3.S1_x_at9/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21660OsAffx.26070.2.S1_x_at9/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21670OsAffx.12977.1.S1_at11/113+12350971..12351207hypothetical protein
LOC_Os03g21680OsAffx.25184.2.S1_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21680Os.15463.1.S1_x_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21680OsAffx.25184.1.S1_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21690Os.8297.1.S1_at10/113+12359231..12364386Lung seven transmembrane receptor family protein, expressed
LOC_Os03g21700Os.54916.1.S1_at11/113+12368897..12370451expressed protein
LOC_Os03g21710NANA3+12373502..12375288WRKY DNA binding domain containing protein
LOC_Os03g21720Os.9262.1.S1_at11/113+12380772..12387306Vacuolar sorting receptor 1 precursor, putative, expressed
LOC_Os03g21720Os.9262.1.S2_at11/113+12380772..12387306Vacuolar sorting receptor 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25184.1.S1_at--1160--10831Chr03:12358550..12358574 (25 bp)
TTGGTAAGTTCTGTTCATCAATTTA
LOC_Os03g21680
OsAffx.25184.1.S1_at--492--171Chr03:12358570..12358594 (25 bp)
ATTTACACGGTGCATCATTTGATTT
LOC_Os03g21680
OsAffx.25184.1.S1_at--522--4971Chr03:12358581..12358605 (25 bp)
GCATCATTTGATTTAGGGCAAGTGT
LOC_Os03g21680
OsAffx.25184.1.S1_at--1162--7591Chr03:12358596..12358620 (25 bp)
GGGCAAGTGTTACCTAGTCATGTAT
LOC_Os03g21680
OsAffx.25184.1.S1_at--297--1171Chr03:12358611..12358635 (25 bp)
AGTCATGTATTATTTGTCTCGAGAA
LOC_Os03g21680
OsAffx.25184.1.S1_at--930--10791Chr03:12358624..12358648 (25 bp)
TTGTCTCGAGAAGTGCAGTAGTGCT
LOC_Os03g21680
OsAffx.25184.1.S1_at--371--1131Chr03:12358635..12358659 (25 bp)
AGTGCAGTAGTGCTGACCTGTCAGT
LOC_Os03g21680
OsAffx.25184.1.S1_at--664--8931Chr03:12358648..12358672 (25 bp)
TGACCTGTCAGTTGTGCCTGTTTCT
LOC_Os03g21680
OsAffx.25184.1.S1_at--618--6631Chr03:12358658..12358682 (25 bp)
GTTGTGCCTGTTTCTCCTTTATCTA
LOC_Os03g21680
OsAffx.25184.1.S1_at--500--10591Chr03:12358669..12358693 (25 bp)
TTCTCCTTTATCTATGGTCCAATGA
LOC_Os03g21680
OsAffx.25184.1.S1_at--875--3691Chr03:12358680..12358704 (25 bp)
CTATGGTCCAATGAGCACAGAAGTA
LOC_Os03g21680
Target Sequence 
TTGGTAAGTTCTGTTCATCAATTTACACGGTGCATCATTTGATTTAGGGCAAGTGTTACCTAGTCATGTATTATTTGTCT
CGAGAAGTGCAGTAGTGCTGACCTGTCAGTTGTGCCTGTTTCTCCTTTATCTATGGTCCAATGAGCACAGAAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis