Browse Element(s) Details


OsAffx.25238.1.S1_at

Description tigr:9631.m02623
TID=OsAffx.25238.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2666011/11hypothetical protein
LOC_Os02g414701/11Lysyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26610Os.46055.2.S1_x_at3/113+15182818..15185824transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g26610Os.10827.1.S1_x_at3/113+15182818..15185824transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g26620Os.53235.1.S1_at11/113+15187636..15189300Chalcone and stilbene synthases, C-terminal domain containing protein, expressed
LOC_Os03g26630Os.28382.1.S2_at11/113+15192959..15197832SAP domain containing protein, expressed
LOC_Os03g26630Os.28382.1.S1_at10/113+15192959..15197832SAP domain containing protein, expressed
LOC_Os03g26650Os.52885.1.S1_at11/113+15202779..15204368heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g26660OsAffx.25238.1.S1_at11/113+15208695..15208943hypothetical protein
LOC_Os03g26670OsAffx.25239.1.S1_at11/113+15211105..15211572hypothetical protein
LOC_Os03g26680OsAffx.25243.2.S1_at11/113+15214274..15214832hypothetical protein
LOC_Os03g26690OsAffx.11259.1.S1_at1/113+15216866..15221596hypothetical protein
LOC_Os03g26704OsAffx.22699.1.S1_x_at2/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.19306.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.20414.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.31697.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.22603.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26720OsAffx.25241.1.S1_at11/113+15230246..15230785hypothetical protein
LOC_Os03g26730NANA3+15233882..15234925hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0006430biological_processlysyl-tRNA aminoacylation
GO:0005737cellular_componentcytoplasm
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0004824molecular_functionlysine-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25238.1.S1_at--336--1511Chr03:15208887..15208911 (25 bp)
AGCAGCCCATCGGAGGCGATCAGCA
LOC_Os03g26660
OsAffx.25238.1.S1_at--915--8531Chr03:15208860..15208884 (25 bp)
TGGAGGAACCACCAGGGACCAGATC
LOC_Os03g26660
OsAffx.25238.1.S1_at--504--7631Chr03:15208846..15208870 (25 bp)
GGGACCAGATCCAAGGCAGCGCGAT
LOC_Os03g26660
OsAffx.25238.1.S1_at--194--4391Chr03:15208836..15208860 (25 bp)
CCAAGGCAGCGCGATGAATGGAGAT
LOC_Os03g26660
OsAffx.25238.1.S1_at--488--8551Chr03:15208818..15208842 (25 bp)
TGGAGATGAGCAATGTGCTGACGAT
LOC_Os03g26660
OsAffx.25238.1.S1_at--608--4571Chr03:15208784..15208808 (25 bp)
GCGCTGCAATGTGCTGAGGACGACA
LOC_Os03g26660
OsAffx.25238.1.S1_at--185--7311Chr03:15208774..15208798 (25 bp)
GTGCTGAGGACGACACCGTCACAAT
LOC_Os03g26660
OsAffx.25238.1.S1_at--557--5631Chr03:15208763..15208787 (25 bp)
GACACCGTCACAATTAGGGATGGCA
LOC_Os03g26660
OsAffx.25238.1.S1_at--85--10072Chr03:15208749..15208773 (25 bp)
TAGGGATGGCAATTTAATTCGTTTG
LOC_Os03g26660
OsAffx.25238.1.S1_at--617--10431Chr03:15208736..15208760 (25 bp)
TTAATTCGTTTGCTCGTTTACTCGT
LOC_Os03g26660
OsAffx.25238.1.S1_at--1093--9371Chr03:15208731..15208755 (25 bp)
TCGTTTGCTCGTTTACTCGTGGGTA
LOC_Os03g26660
Target Sequence 
AGCAGCCCATCGGAGGCGATCAGCAGGTGGAGGAACCACCAGGGACCAGATCCAAGGCAGCGCGATGAATGGAGATGAGC
AATGTGCTGACGATGACGACGGGGCGCTGCAATGTGCTGAGGACGACACCGTCACAATTAGGGATGGCAATTTAATTCGT
TTGCTCGTTTACTCGTGGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis