Browse Element(s) Details


OsAffx.25305.1.S1_at

Description tigr:9631.m03013
TID=OsAffx.25305.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3074411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30710Os.56292.1.S1_x_at2/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30710Os.27691.1.S1_x_at1/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30710Os.56292.1.S1_at1/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30710OsAffx.30013.5.S1_x_at1/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30710Os.44554.1.A1_at1/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30720NANA3+17463193..17464386retrotransposon protein, putative, unclassified
LOC_Os03g30730OsAffx.19695.1.S1_at1/113+17464861..17467296retrotransposon protein, putative, unclassified
LOC_Os03g30730Os.57082.1.S1_at1/113+17464861..17467296retrotransposon protein, putative, unclassified
LOC_Os03g30730OsAffx.29554.1.S1_at1/113+17464861..17467296retrotransposon protein, putative, unclassified
LOC_Os03g30740Os.22569.1.S1_at11/113+17469962..17476789expressed protein
LOC_Os03g30740OsAffx.13134.1.S1_at10/113+17469962..17476789expressed protein
LOC_Os03g30744OsAffx.25305.1.S1_at11/113+17476680..17477102hypothetical protein
LOC_Os03g30750OsAffx.25306.1.S1_at10/113+17478662..17480741hypothetical protein
LOC_Os03g30750OsAffx.32287.1.S1_x_at1/113+17478662..17480741hypothetical protein
LOC_Os03g30760OsAffx.3170.1.S1_at1/113+17490069..17492879retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25305.1.S1_at--196--8591Chr03:17476710..17476734 (25 bp)
TGGTCACTAGGATGGATGGCGCGGA
LOC_Os03g30744
OsAffx.25305.1.S1_at--439--2731Chr03:17476754..17476778 (25 bp)
AAGAAGGAGGAAGCCCTACTCGCTA
LOC_Os03g30744
OsAffx.25305.1.S1_at--482--3731Chr03:17476769..17476793 (25 bp)
CTACTCGCTACTCGCGGGATGGATG
LOC_Os03g30744
OsAffx.25305.1.S1_at--1140--8191Chr03:17476810..17476834 (25 bp)
GGCAAGGGCAAAACTCACGCACGAT
LOC_Os03g30744
OsAffx.25305.1.S1_at--693--2531Chr03:17476821..17476845 (25 bp)
AACTCACGCACGATAGAGCGCGTCA
LOC_Os03g30744
OsAffx.25305.1.S1_at--708--291Chr03:17476833..17476857 (25 bp)
ATAGAGCGCGTCAAAATGGCAGAGG
LOC_Os03g30744
OsAffx.25305.1.S1_at--658--831Chr03:17476848..17477016 (25 bp)
ATGGCAGAGGGTATGGCTCACCAAA
LOC_Os03g30744
OsAffx.25305.1.S1_at--379--8491Chr03:17477005..17477029 (25 bp)
TGGCTCACCAAATGGGACGTGCTGT
LOC_Os03g30744
OsAffx.25305.1.S1_at--670--3291Chr03:17477013..17477037 (25 bp)
CAAATGGGACGTGCTGTGTTGGCCC
LOC_Os03g30744
OsAffx.25305.1.S1_at--756--10851Chr03:17477031..17477055 (25 bp)
TTGGCCCCACGTGCTGAGTCTAGAG
LOC_Os03g30744
OsAffx.25305.1.S1_at--657--4751Chr03:17477043..17477067 (25 bp)
GCTGAGTCTAGAGCCCATGTACGAT
LOC_Os03g30744
Target Sequence 
TGGTCACTAGGATGGATGGCGCGGAAGCAGCAGCCGAAAGCAGCAAGAAGGAGGAAGCCCTACTCGCTACTCGCGGGATG
GATGGGGATCGGCGGAGGCGGGCAAGGGCAAAACTCACGCACGATAGAGCGCGTCAAAATGGCAGAGGGTATGGCTCACC
AAATGGGACGTGCTGTGTTGGCCCCACGTGCTGAGTCTAGAGCCCATGTACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis